diff options
| author | Lars-Dominik Braun <lars@6xq.net> | 2021-10-05 13:51:04 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-10-08 09:13:53 +0200 |
| commit | 7eb9fe4e538ce8cdac28abb0e5433b1b797b5030 (patch) | |
| tree | a27e96ad2b016aac4a16356f73c88593366746db /gnu | |
| parent | ed044023d7ed8cfe113f4d6e1a6af17a09f49795 (diff) | |
| download | guix-7eb9fe4e538ce8cdac28abb0e5433b1b797b5030.tar.gz guix-7eb9fe4e538ce8cdac28abb0e5433b1b797b5030.zip | |
gnu: ngless: Fix build.
Apply upstream patch to restore compatibility with current Stackage.
* gnu/packages/patches/ngless-unliftio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bioinformatics.scm (ngless): Use it.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 3 | ||||
| -rw-r--r-- | gnu/packages/patches/ngless-unliftio.patch | 66 |
3 files changed, 69 insertions, 1 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 9c83d7e6bd..43bb7208ba 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1513,6 +1513,7 @@ dist_patch_DATA = \ %D%/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch \ %D%/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch \ %D%/packages/patches/ngircd-handle-zombies.patch \ + %D%/packages/patches/ngless-unliftio.patch \ %D%/packages/patches/network-manager-plugin-path.patch \ %D%/packages/patches/nginx-socket-cloexec.patch \ %D%/packages/patches/nnpack-system-libraries.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa4c1ee8f4..932073ef5a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12467,7 +12467,8 @@ datasets.") (file-name (git-file-name name version)) (sha256 (base32 - "0pb9f6b0yk9p4cdwiym8r190q1bcdiwvc7i2s6rw54qgi8r3g6pj")))) + "0pb9f6b0yk9p4cdwiym8r190q1bcdiwvc7i2s6rw54qgi8r3g6pj")) + (patches (search-patches "ngless-unliftio.patch")))) (build-system haskell-build-system) (arguments `(#:haddock? #f ; The haddock phase fails with: NGLess/CmdArgs.hs:20:1: diff --git a/gnu/packages/patches/ngless-unliftio.patch b/gnu/packages/patches/ngless-unliftio.patch new file mode 100644 index 0000000000..87f5e79fcf --- /dev/null +++ b/gnu/packages/patches/ngless-unliftio.patch @@ -0,0 +1,66 @@ +From 919565adc1216b9d3108b3043e8d307292b37393 Mon Sep 17 00:00:00 2001 +From: Luis Pedro Coelho <luis@luispedro.org> +Date: Fri, 7 May 2021 11:42:56 +0800 +Subject: [PATCH] BLD Update to LTS-17.10 + +- Updates the GHC version +- Requires `extra-deps` for `diagrams` package +- Simplifies code for NGLessIO monad as UnliftIO can now be auto-derived +--- + NGLess/NGLess/NGError.hs | 8 ++------ + stack.yaml | 11 ++++++++--- + 2 files changed, 10 insertions(+), 9 deletions(-) + +diff --git a/NGLess/NGLess/NGError.hs b/NGLess/NGLess/NGError.hs +index a22e557f..c7eddf5b 100644 +--- a/NGLess/NGLess/NGError.hs ++++ b/NGLess/NGLess/NGError.hs +@@ -50,7 +50,8 @@ type NGLess = Either NGError + + newtype NGLessIO a = NGLessIO { unwrapNGLessIO :: ResourceT IO a } + deriving (Functor, Applicative, Monad, MonadIO, +- MonadResource, MonadThrow, MonadCatch, MonadMask) ++ MonadResource, MonadThrow, MonadCatch, MonadMask, ++ MonadUnliftIO) + + + instance MonadError NGError NGLessIO where +@@ -62,11 +63,6 @@ instance PrimMonad NGLessIO where + primitive act = NGLessIO (primitive act) + {-# INLINE primitive #-} + +-instance MonadUnliftIO NGLessIO where +- askUnliftIO = NGLessIO $ do +- u <- askUnliftIO +- return $ UnliftIO (\(NGLessIO act) -> unliftIO u act) +- + instance MonadFail NGLessIO where + fail err = throwShouldNotOccur err + +diff --git a/stack.yaml b/stack.yaml +index 051d973d..11b65887 100644 +--- a/stack.yaml ++++ b/stack.yaml +@@ -1,14 +1,19 @@ + # For more information, see: https://github.com/commercialhaskell/stack/blob/release/doc/yaml_configuration.md + +-resolver: lts-14.20 ++resolver: lts-17.10 + compiler-check: newer-minor + + # Packages to be pulled from upstream that are not in the resolver (e.g., acme-missiles-0.3) + extra-deps: + - git: "https://github.com/ngless-toolkit/interval-to-int" + commit: "78289f6b48d41f7cc48169520ec9b77b050a0029" +- +- ++ - diagrams-core-1.4.2@sha256:47de45658e8a805b7cb7f535e7b093daf7e861604fa3c70e25bd4ef481bf1571,2997 ++ - diagrams-lib-1.4.3@sha256:04f77778d4b550d3c8e54440800685f88467bef91075e82e009a8a6f45c51033,8232 ++ - diagrams-svg-1.4.3@sha256:36708b0b4cf35507ccf689f1a25f6f81b8f41c2c4c2900793de820f66d4e241c,3181 ++ - active-0.2.0.14@sha256:e618aba4a7881eb85dc1585e0a01230af6b4fbab6693931e4a5d0d3a5b184406,1823 ++ - dual-tree-0.2.2.1@sha256:9ff31e461d873ae74ba51d93b454c0c4094726d7cb78a0c454394c965e83539d,2830 ++ - monoid-extras-0.5.1@sha256:438dbfd7b4dce47d8f0ca577f56caf94bd1e21391afa545cad09fe7cf2e5793d,2333 ++ - svg-builder-0.1.1@sha256:22de54d326a6b6912e461e1302edb9108b02aac0b6a6368fcdc3c4a224d487fd,1440 + allow-newer: true + + # Override default flag values for local packages and extra-deps |