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authorRicardo Wurmus <rekado@elephly.net>2021-06-21 17:52:00 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-06-21 17:53:26 +0200
commit7209beb694401a0a180c43e11f1d7efd9807aafc (patch)
treec2144dcf63138de806961d8bbf09ce1e309d39a3 /gnu
parenta41bddd29d60ba37ce13f3f34b466ae8008db27e (diff)
downloadguix-7209beb694401a0a180c43e11f1d7efd9807aafc.tar.gz
guix-7209beb694401a0a180c43e11f1d7efd9807aafc.zip
gnu: Add r-leidenbase.
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fd9d80cbdf..f218fd1285 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6371,6 +6371,40 @@ tasks on single cell expression data. It is designed to work with RNA-Seq and
qPCR data, but could be used with other types as well.")
(license license:artistic2.0)))
+(define-public r-leidenbase
+ (let ((commit "430f22af6982cc7d2e6e77f6b0df47bc970dcbce")
+ (revision "1"))
+ (package
+ (name "r-leidenbase")
+ (version (git-version "0.1.3" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cole-trapnell-lab/leidenbase")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0ylqsmdpv4xq6f6ldxvwkhk33a9i1jcgk60zvksk3iplykfzd6c0"))))
+ (properties `((upstream-name . "leidenbase")))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)))
+ (home-page "https://github.com/cole-trapnell-lab/leidenbase")
+ (synopsis "R and C wrappers to run the Leiden find_partition function")
+ (description
+ "This package provides an R to C interface that runs the Leiden
+community detection algorithm to find a basic partition. It runs the
+equivalent of the @code{find_partition} function. This package includes the
+required source code files from the official Leidenalg distribution and
+several functions from the R igraph package.")
+ (license license:gpl3+))))
+
(define-public r-monocle3
(package
(name "r-monocle3")