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authorRicardo Wurmus <rekado@elephly.net>2024-01-23 12:00:54 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-23 13:36:47 +0100
commit6e835cd380c040aefbf38959634022417b29eb5b (patch)
tree7f3bfd7690d548d2361eb915c2e67c46308abae3 /gnu
parent994817bfdccc715dccfa96366fc286a80171a7e6 (diff)
downloadguix-6e835cd380c040aefbf38959634022417b29eb5b.tar.gz
guix-6e835cd380c040aefbf38959634022417b29eb5b.zip
gnu: Add r-scenic.
* gnu/packages/bioinformatics.scm (r-scenic): New variable. Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm37
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4198acecda..40a264fd61 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1100,6 +1100,43 @@ high-throughput sequence analysis. The package is primarily useful to
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-scenic
+ (let ((commit "cedf8490a634da550cea2c831544e5f7f14467d2")
+ (revision "1"))
+ (package
+ (name "r-scenic")
+ (version (git-version "1.3.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/aertslab/SCENIC")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "17ai0q260hdqbvm1km1s5dw93pgz4f546ycfii57jyy9m9jka7r0"))))
+ (properties `((upstream-name . "SCENIC")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-aucell
+ r-data-table
+ r-dynamictreecut
+ r-genie3
+ r-ggrepel
+ r-mixtools
+ r-nmf
+ r-rcistarget
+ r-rtsne))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/aertslab/SCENIC")
+ (synopsis
+ "SCENIC (Single Cell rEgulatory Network Inference and Clustering)")
+ (description "SCENIC (Single-cell regulatory network inference and
+clustering) is an R package to infer Gene Regulatory Networks and cell types
+from single-cell RNA-seq data.")
+ ;; As of commit cedf8490a634da550cea2c831544e5f7f14467d2 the license is
+ ;; GPLv3.
+ (license license:gpl3))))
+
(define-public r-singlet
(let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
(revision "1"))