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authorRicardo Wurmus <rekado@elephly.net>2018-10-21 12:33:01 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-21 23:06:45 +0200
commit2ba2d62c69409255e0c00c480c424c668cba845f (patch)
treefa39fb5e5ed046383a2a74cbe34b15b9b9c15c79 /gnu
parent1d18ee6dfd99d9945a0e8eae7557250a1bdc6306 (diff)
downloadguix-2ba2d62c69409255e0c00c480c424c668cba845f.tar.gz
guix-2ba2d62c69409255e0c00c480c424c668cba845f.zip
gnu: python2-bx-python: Update to 0.8.2.
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2. [source]: Remove obsolete snippet. [inputs]: Move python2-numpy from here... [propagated-inputs]: ...to here; add python2-six. [native-inputs]: Add python2-lzo and python2-cython. [home-page]: Update to new home at Github.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 10 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 593b5b6202..dee8a975b9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1477,31 +1477,27 @@ well as many of the command line options.")
(define-public python2-bx-python
(package
(name "python2-bx-python")
- (version "0.7.3")
+ (version "0.8.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "bx-python" version))
(sha256
(base32
- "15z2w3bvnc0n4qmb9bd6d8ylc2h2nj883x2w9iixf4x3vki9b22i"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- (substitute* "setup.py"
- ;; remove dependency on outdated "distribute" module
- (("^from distribute_setup import use_setuptools") "")
- (("^use_setuptools\\(\\)") ""))
- #t))))
+ "11kksg2rbzihpmcid823xvg42xi88m7sz58rzk29abybkxy0rszs"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ;tests fail because test data are not included
#:python ,python-2))
- (inputs
+ (propagated-inputs
`(("python-numpy" ,python2-numpy)
- ("zlib" ,zlib)))
+ ("python-six" ,python2-six)))
+ (inputs
+ `(("zlib" ,zlib)))
(native-inputs
- `(("python-nose" ,python2-nose)))
- (home-page "http://bitbucket.org/james_taylor/bx-python/")
+ `(("python-lzo" ,python2-lzo)
+ ("python-nose" ,python2-nose)
+ ("python-cython" ,python2-cython)))
+ (home-page "https://github.com/bxlab/bx-python")
(synopsis "Tools for manipulating biological data")
(description
"bx-python provides tools for manipulating biological data, particularly