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authorNavid Afkhami <navid.afkhami@mdc-berlin.de>2023-03-14 15:01:29 +0000
committerRicardo Wurmus <rekado@elephly.net>2023-03-14 17:58:28 +0100
commit204c51cac44809dc352c86bb33332fc75e2b0056 (patch)
tree516a119c82988ace9dca2195cb3e310691914c20 /gnu
parent4ebc36206bb80cbaa20e76790d93918d1231ae57 (diff)
downloadguix-204c51cac44809dc352c86bb33332fc75e2b0056.tar.gz
guix-204c51cac44809dc352c86bb33332fc75e2b0056.zip
gnu: Add r-premessa.
* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm56
1 files changed, 56 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4de546e1f8..a9c62ab8b1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8940,6 +8940,62 @@ target genes, Pando simultaneously infers gene modules and sets of regulatory
regions for each transcription factor.")
(license license:expat)))
+(define-public r-premessa
+ (let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
+ (revision "1"))
+ (package
+ (name "r-premessa")
+ (version (git-version "0.3.4" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ParkerICI/premessa")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))
+ (snippet
+ '(delete-file "inst/normalizer_shinyGUI/www/d3.min.js"))))
+ (properties `((upstream-name . "premessa")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'process-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (with-directory-excursion "inst/normalizer_shinyGUI/www/"
+ (invoke "esbuild" (assoc-ref inputs "d3.v4.js")
+ "--minify" "--outfile=d3.min.js")))))))
+ (propagated-inputs
+ (list r-data-table
+ r-flowcore
+ r-ggplot2
+ r-gridextra
+ r-hexbin
+ r-jsonlite
+ r-reshape
+ r-rhandsontable
+ r-shiny
+ r-shinyjqui))
+ (native-inputs
+ `(("esbuild" ,esbuild)
+ ("d3.v4.js"
+ ,(origin
+ (method url-fetch)
+ (uri "https://d3js.org/d3.v4.js")
+ (sha256
+ (base32
+ "0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg"))))))
+ (home-page "https://github.com/ParkerICI/premessa")
+ (synopsis "Pre-processing of flow and mass cytometry data")
+ (description
+ "This is an R package for pre-processing of flow and mass cytometry
+data. This package includes panel editing or renaming for FCS files,
+bead-based normalization and debarcoding.")
+ (license license:gpl3))))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))