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author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 15:20:48 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-27 16:17:19 +0100 |
commit | 0d50d0df0866430814d3b55cb305c352e796cd55 (patch) | |
tree | a45211fcb29a7f721c995274457525b6968dbd3d /gnu | |
parent | 2d704608924baf2a206c997e462ae07c516e4391 (diff) | |
download | guix-0d50d0df0866430814d3b55cb305c352e796cd55.tar.gz guix-0d50d0df0866430814d3b55cb305c352e796cd55.zip |
gnu: Add r-msigdbr.
* gnu/packages/cran.scm (r-msigdbr): New variable.
Diffstat (limited to 'gnu')
-rw-r--r-- | gnu/packages/cran.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 29af7ff2b6..4e6604ac83 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13066,3 +13066,34 @@ The extrafont package makes both of these things easier.") "This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic.") (license license:gpl3))) + +(define-public r-msigdbr + (package + (name "r-msigdbr") + (version "6.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "msigdbr" version)) + (sha256 + (base32 + "1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-magrittr" ,r-magrittr) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble))) + (home-page "https://github.com/igordot/msigdbr") + (synopsis "MSigDB gene sets for multiple organisms") + (description + "This package provides the @dfn{Molecular Signatures Database} (MSigDB) +gene sets typically used with the @dfn{Gene Set Enrichment Analysis} (GSEA) +software in a standard R data frame with key-value pairs. Included are the +original human gene symbols and Entrez IDs as well as the equivalents for +various frequently studied model organisms such as mouse, rat, pig, fly, and +yeast.") + ;; The package is covered under the Expat license, but the upstream MSigDB + ;; files are made available under the Creative Commons Attribution 4.0 + ;; International license. + (license (list license:expat license:cc-by4.0)))) |