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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:25:58 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:37:59 +0200
commit0b5b41c5614be969e611f3dc3e1462eb8135b3e8 (patch)
treebf882874746f777dab720dcfef5f904a1b7a94c5 /gnu
parentff65fa90d268bbe3f868be4cb5d9e2bb5ab6c3dd (diff)
downloadguix-0b5b41c5614be969e611f3dc3e1462eb8135b3e8.tar.gz
guix-0b5b41c5614be969e611f3dc3e1462eb8135b3e8.zip
gnu: r-genomicfiles: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here... * gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm34
-rw-r--r--gnu/packages/bioinformatics.scm34
2 files changed, 34 insertions, 34 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3e536e0299..c369ac0cb4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2751,6 +2751,40 @@ transcripts, exons, cds and genes. Flexible methods are provided for
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
+(define-public r-genomicfiles
+ (package
+ (name "r-genomicfiles")
+ (version "1.26.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicFiles" version))
+ (sha256
+ (base32
+ "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
+ (properties `((upstream-name . "GenomicFiles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrixgenerics" ,r-matrixgenerics)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/GenomicFiles")
+ (synopsis "Distributed computing by file or by range")
+ (description
+ "This package provides infrastructure for parallel computations
+distributed by file or by range. User defined mapper and reducer functions
+provide added flexibility for data combination and manipulation.")
+ (license license:artistic2.0)))
+
(define-public r-genomicranges
(package
(name "r-genomicranges")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a57c420a07..38f3298c23 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9168,40 +9168,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-genomicfiles
- (package
- (name "r-genomicfiles")
- (version "1.26.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomicFiles" version))
- (sha256
- (base32
- "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
- (properties `((upstream-name . "GenomicFiles")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-matrixgenerics" ,r-matrixgenerics)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-variantannotation" ,r-variantannotation)))
- (home-page "https://bioconductor.org/packages/GenomicFiles")
- (synopsis "Distributed computing by file or by range")
- (description
- "This package provides infrastructure for parallel computations
-distributed by file or by range. User defined mapper and reducer functions
-provide added flexibility for data combination and manipulation.")
- (license license:artistic2.0)))
-
(define-public r-dirichletmultinomial
(package
(name "r-dirichletmultinomial")