gnu: r-broom: Update to 0.4.4. - guix - Wojtek's customized Guix

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author	Tobias Geerinckx-Rice <me@tobias.gr>	2018-04-05 05:53:18 +0200
committer	Tobias Geerinckx-Rice <me@tobias.gr>	2018-04-05 06:38:58 +0200
commit	14b78ca6dcb1cf8b7a8b8017d5228f1ac7649781 (patch)
tree	ad98deeb2249279463918a29e339e67daad77c6f /gnu/services
parent	e155c6034bd2a91791dcefa26be0aefeecd3794e (diff)
download	guix-14b78ca6dcb1cf8b7a8b8017d5228f1ac7649781.tar.gz guix-14b78ca6dcb1cf8b7a8b8017d5228f1ac7649781.zip

gnu: r-broom: Update to 0.4.4.

* gnu/packages/cran.scm (r-broom): Update to 0.4.4.

Diffstat (limited to 'gnu/services')

0 files changed, 0 insertions, 0 deletions

$output) (("\\$\\{CONFIG_SHELL-/bin/sh\\}") (which "bash"))))) (replace 'configure (lambda _ (invoke "./configure"))) (add-after 'configure 'patch-cfgcache (lambda* (#:key outputs #:allow-other-keys) (substitute* "cfgcache.pm" (("/usr/local") #$output))))))) (inputs (list perl)) (synopsis "LaTeX documents to HTML") (description "LaTeX2HTML is a utility that converts LaTeX documents to web pages in HTML.") (home-page "https://www.latex2html.org/") (license license:gpl2+))) (define-public asciidoc (package (name "asciidoc") (version "9.1.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/asciidoc/asciidoc-py") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "1clf1axkns23wfmh48xfspzsnw04pjh4mq1pshpzvj0cwxhz0yaq")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no 'check' target #:phases (modify-phases %standard-phases (replace 'bootstrap (lambda _ (invoke "autoconf"))) ;; Some XML-related binaries are required for asciidoc's proper usage. ;; Without these, asciidoc fails when parsing XML documents, either ;; reporting a missing "xmllint" binary or, when passed the ;; "--no-xmllint" option, a missing "xsltproc" binary. ;; The following phase enables asciidoc to find some of them. (add-before 'configure 'set-xml-binary-paths (lambda* (#:key inputs #:allow-other-keys) (let* ((libxml2 (assoc-ref inputs "libxml2")) (xmllint (string-append libxml2 "/bin/xmllint")) (libxslt (assoc-ref inputs "libxslt")) (xsltproc (string-append libxslt "/bin/xsltproc"))) (substitute* "a2x.py" (("XMLLINT = 'xmllint'") (string-append "XMLLINT = '" xmllint "'")) (("XSLTPROC = 'xsltproc'") (string-append "XSLTPROC = '" xsltproc "'")))))) ;; Make asciidoc use the local docbook-xsl package instead of fetching ;; it from the internet at run-time. (add-before 'install 'make-local-docbook-xsl (lambda* (#:key inputs #:allow-other-keys) (substitute* (find-files "docbook-xsl" ".*\\.xsl$") (("xsl:import href=\"http://docbook.sourceforge.net/\ release/xsl/current") (string-append "xsl:import href=\"" (string-append (assoc-ref inputs "docbook-xsl") "/xml/xsl/docbook-xsl-" ,(package-version docbook-xsl))))))) ;; Do the same for docbook-xml. (add-before 'install 'make-local-docbook-xml (lambda* (#:key inputs #:allow-other-keys) (substitute* "docbook45.conf" (("http://www.oasis-open.org/docbook/xml/4.5/docbookx.dtd") (string-append (assoc-ref inputs "docbook-xml") "/xml/dtd/docbook/docbookx.dtd")))))))) (native-inputs (list autoconf)) (inputs (list python docbook-xml-4.5 docbook-xsl libxml2 libxslt)) (home-page "https://asciidoc.org/") (synopsis "Text-based document generation system") (description "AsciiDoc is a text document format for writing notes, documentation, articles, books, ebooks, slideshows, web pages, man pages and blogs. AsciiDoc files can be translated to many formats including HTML, PDF, EPUB, man page. AsciiDoc is highly configurable: both the AsciiDoc source file syntax and the backend output markups (which can be almost any type of SGML/XML markup) can be customized and extended by the user.") (license license:gpl2+))) (define-deprecated asciidoc-py3 asciidoc) (define-public doxygen (package (name "doxygen") (version "1.9.8") (home-page "https://www.doxygen.nl/") (source (origin (method url-fetch) (uri (list (string-append home-page "files/doxygen-" version ".src.tar.gz") (string-append "mirror://sourceforge/doxygen/rel-" version "/doxygen-" version ".src.tar.gz"))) (sha256 (base32 "0qjgw7bnx668hpi4r8m366vsq118s9365zf8z4x5yjrqx0ld5qq5")))) (build-system cmake-build-system) (native-inputs (list bison flex libxml2 ;provides xmllint for the tests python)) ;for creating the documentation (inputs (list bash-minimal)) (arguments ;; Force cmake to use iconv header from cross-libc instead of the one ;; from native libc. (list #:configure-flags (if (%current-target-system) #~(list (string-append "-DICONV_INCLUDE_DIR=" (assoc-ref %build-inputs "cross-libc") "/include")) #~'()) #:test-target "tests" #:phases #~(modify-phases %standard-phases (add-after 'unpack 'disable-bibtex-test (lambda _ ;; Disable test that requires bibtex to avoid a ;; circular dependency. (for-each delete-file-recursively '("testing/012" "testing/012_cite.dox")))) (add-before 'configure 'patch-sh (lambda* (#:key inputs #:allow-other-keys) (let ((/bin/sh (search-input-file inputs "/bin/sh"))) (substitute* "src/portable.cpp" (("/bin/sh") /bin/sh))))) #$@(if (target-hurd?) #~((add-after 'unpack 'apply-patch (lambda _ (let ((patch-file #$(local-file (search-patch "doxygen-hurd.patch")))) (invoke "patch" "--force" "-p1" "-i" patch-file))))) #~())))) (synopsis "Generate documentation from annotated sources") (description "Doxygen is the de facto standard tool for generating documentation from annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl, and to some extent D.") (license license:gpl3+))) (define-public halibut (package (name "halibut") (version "1.3") (source (origin (method url-fetch) (uri (string-append "https://www.chiark.greenend.org.uk/~sgtatham/halibut/halibut-" version "/halibut-" version ".tar.gz")) (sha256 (base32 "0ciikn878vivs4ayvwvr63nnhpcg12m8023xv514zxqpdxlzg85a")))) (build-system cmake-build-system) (arguments '(#:tests? #f)) ;No tests. (native-inputs (list pkg-config perl)) (home-page "https://www.chiark.greenend.org.uk/~sgtatham/halibut/") (synopsis "Documentation production system for software manuals") (description "Halibut is a text formatting system designed primarily for writing software documentation. It accepts a single source format and outputs any combination of plain text, HTML, Unix man or info pages, PostScript or PDF. It has extensive support for indexing and cross-referencing, and generates hyperlinks within output documents wherever possible. It supports Unicode, with the ability to fall back to an alternative representation if Unicode output is not available.") (license license:expat))) (define-public doc++ (package (name "doc++") (version "3.4.10") (source (origin (method url-fetch) (uri (string-append "https://sourceforge.net/projects/docpp/" "files/doc++-" version ".tar.gz")) (sha256 (base32 "0i37zlxl8g352s4hzpdx0657k5x3czh3xcsfr27irc708gb277pn")) (patches (search-patches "doc++-include-directives.patch" "doc++-segfault-fix.patch")))) (build-system gnu-build-system) (native-inputs (list flex gettext-minimal)) (home-page "https://docpp.sourceforge.net") (synopsis "Documentation system for C, C++, IDL, and Java") (description "DOC++ is a documentation system for C, C++, IDL, and Java. It can generate both TeX output for high-quality hardcopies or HTML output for online browsing. The documentation is extracted directly from the C/C++/IDL source or Java class files.") (license license:gpl2+))) (define-public pod2pdf (package (name "pod2pdf") (version "0.42") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/J/JO/JONALLEN/pod2pdf-" version ".tar.gz")) (sha256 (base32 "0w5p7yy01vph74nfr9qzjb18p1avmhhcpza0qz9r88fmb0blbiyv")))) (build-system perl-build-system) (propagated-inputs (list perl-getopt-argvfile perl-pdf-api2 perl-pod-parser)) (home-page "https://metacpan.org/release/pod2pdf") (synopsis "Convert Pod to PDF format") (description "pod2pdf converts documents written in Perl's @acronym{POD, Plain Old Documentation} format to PDF files. It also supports some extensions to the POD format, and supports the file types JPG, GIF, TIFF, PNG, and PNM for embedded objects.") (license license:artistic2.0))) (define-public python-docrepr (package (name "python-docrepr") (version "0.2.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/spyder-ide/docrepr") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "1ma5gwy93m1djd3zdlnqfrwhgr8ic1qbsz5kkrb9f987ax40lfkd")) (patches (search-patches "python-docrepr-fix-tests.patch")))) (build-system python-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-sources (lambda _ ;; XXX: This fixes an issue where shutil.copytree would fail ;; merging directories with same files copied by Sphinx from the ;; store (hence read-only, throwing a Permission denied error). ;; In the case this happens, it falls back to a manual copy ;; routine that omits overwriting same-named files (see: ;; https://github.com/spyder-ide/docrepr/issues/54). (substitute* "docrepr/utils.py" (("except TypeError") "except (TypeError, shutil.Error)")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "pytest" "-p" "no:warnings" "-vv"))))))) (native-inputs (list python-ipython python-matplotlib python-numpy python-pytest python-pytest-asyncio)) (propagated-inputs (list python-docutils python-jinja2 python-matplotlib python-sphinx)) (home-page "https://github.com/spyder-ide/docrepr/") (synopsis "Python docstrings to HTML renderer") (description "Docrepr renders Python docstrings to HTML with Sphinx. It can generate rich and plain representations of docstrings, alongside additional metadata about the object to which the docstring belongs.") (license license:bsd-3))) (define-public scrollkeeper (package (name "scrollkeeper") (version "0.3.14") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/scrollkeeper/scrollkeeper/" version "/scrollkeeper-" version ".tar.gz")) (sha256 (base32 "1bfxwxc1ngh11v36z899sz9qam366r050fhkyb5adv65lb1x62sa")))) (build-system gnu-build-system) (arguments `(#:configure-flags (list (string-append "--with-xml-catalog=" (assoc-ref %build-inputs "docbook-xml") "/xml/dtd/docbook/catalog.xml")))) (inputs (list perl libxml2 libxslt ;; The configure script checks for either version 4.2 or 4.1.2. docbook-xml-4.2)) (native-inputs (list intltool)) (home-page "https://scrollkeeper.sourceforge.net/") (synopsis "Open Documentation Cataloging Project") (description "ScrollKeeper is a cataloging system for documentation. It manages documentation metadata as specified by the Open Source Metadata Framework and provides a simple API to allow help browsers to find, sort, and search the document catalog. It will also be able to communicate with catalog servers on the Net to search for documents which are not on the local system.") (license license:lgpl2.1+))) (define-public zeal (package (name "zeal") (version "0.7.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/zealdocs/zeal") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "1yz9zz18rh1d67w40ib4pna70vqkwa9i9nyj423rjysv5rdj2pzp")))) (build-system qt-build-system) (arguments (list #:tests? #f)) ;no tests (native-inputs (list extra-cmake-modules pkg-config)) (inputs (list bash-minimal libarchive sqlite qtbase-5 qtdeclarative-5 qtwebchannel-5 qtwebengine-5 qtquickcontrols-5 qtx11extras xcb-util-keysyms)) (home-page "https://zealdocs.org/") (synopsis "Offline documentation browser inspired by Dash") (description "Zeal is a simple offline documentation browser inspired by Dash.") (license license:gpl3+))) (define-public markdeep (package (name "markdeep") (version "1.16") (home-page "https://casual-effects.com/markdeep/") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/morgan3d/markdeep") (commit (string-append "v0" version)))) (file-name (git-file-name name version)) (sha256 (base32 "05bvw3993xh1260ckclwk4jw38hvgiff0b2940ryhbhz0p1k41l8")))) (build-system copy-build-system) (arguments (list #:modules '((guix build utils) (guix build copy-build-system) (ice-9 popen)) #:install-plan ''(("." "/share/markdeep/")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-urls (lambda _ (for-each (lambda (filename) (substitute* filename ;; Don't include a reference to the remote version. (("<script src=\"https://casual-effects\\.com/\ markdeep/latest/markdeep\\.min\\.js\\?\"></script>") "") (("MATHJAX_URL = .*$") ;; Use our local copy of mathjax (string-append "MATHJAX_URL = 'file://" #$js-mathjax "/share/javascript/es5/tex-mml-chtml.js'")))) (find-files "." (lambda (file stat) (string-suffix? ".js" file)))))) (add-before 'install 'minify (lambda _ (for-each (lambda (filename) (let ((minified-filename (string-append (string-drop-right filename 3) ".min.js"))) (format #t "~a -> ~a~%" filename minified-filename) (let ((minified (open-pipe* OPEN_READ "uglifyjs" filename))) (call-with-output-file minified-filename (lambda (port) (dump-port minified port))) (let ((exit (close-pipe minified))) (unless (zero? exit) (error "uglifyjs failed" exit)))))) (find-files "latest" (lambda (path stat) (and (string-suffix? ".js" path) (not (string-suffix? ".min.js" path))))))))))) (inputs (list js-mathjax)) (native-inputs (list uglifyjs)) (synopsis "Tool for displaying markdown documents in a web-browser") (description "Markdeep is a technology for writing plain text documents that can be displayed in any web browser, whether local or remote. It supports diagrams, calendars, equations, and other features as extensions of Markdown syntax.") (license license:bsd-2))) (define-public stddoc (let ((commit "6eef9deaf2e36bae812f50e448a8012b3e5efb14") (revision "1")) (package (name "stddoc") (version (git-version "1.0.2" revision commit)) (home-page "https://github.com/r-lyeh/stddoc.c") (source (origin (method git-fetch) (uri (git-reference (url home-page) (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "06phjp7wbf4x1sagxwfapgv6iyiixmijxxbg2clb48kyvjg5mlwn")) (snippet #~(delete-file "stddoc.c.html")))) (build-system gnu-build-system) (arguments (list #:tests? #f ; no tests #:phases #~(modify-phases %standard-phases (replace 'configure (lambda _ (substitute* "stddoc.c" ;; Note: For some reason quote characters are being ;; inserted into urls and tags, eg. ;; 'https://morgan3d.github.io/m""arkdeep/latest/markdeep.min.js?' (("https://casual-effects.com/m\"*arkdeep/latest/") (string-append #$markdeep "/share/markdeep/latest/")) (("https://morgan3d.github.io/m\"*arkdeep/latest/") (string-append #$markdeep "/share/markdeep/latest/"))))) (replace 'build (lambda _ (invoke #$(cc-for-target) "-O2" "-g" "-o" "stddoc" "stddoc.c") (with-input-from-file "stddoc.c" (lambda _ (with-output-to-file "stddoc.c.html" (lambda _ (invoke #$(if (%current-target-system) "stddoc" "./stddoc")))))))) (replace 'install (lambda _ (install-file "stddoc" (string-append #$output "/bin")) (install-file "stddoc.c.html" (string-append #$output "/share/doc"))))))) (native-inputs (if (%current-target-system) (list this-package) '())) (synopsis "Documentation generator for multiple programming languages") (description "@code{stddoc.c} is a tiny documentation generator with many supported programming languages. Markdeep code comments are extracted from stdin and printed into stdout as a HTML file.") (license license:unlicense))))


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