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| author | Nicolas Vallet <nicolas.vallet@inserm.fr> | 2021-12-01 09:25:19 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-01 09:29:26 +0100 |
| commit | d7477f09c3e907024297d0640dff3f22a49a59ec (patch) | |
| tree | 5cbfe6900bdabe7e14a7e942dec2933e29388177 /gnu/packages | |
| parent | 3411f8d512ae2631e7320010e84b937e5bcf0c34 (diff) | |
| download | guix-d7477f09c3e907024297d0640dff3f22a49a59ec.tar.gz guix-d7477f09c3e907024297d0640dff3f22a49a59ec.zip | |
gnu: Add r-phyloseq.
* gnu/packages/cran.scm (r-phyloseq): New variable
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9d64388a46..bcd26c7181 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11,6 +11,7 @@ ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com> +;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -15058,3 +15059,41 @@ and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.") (license license:gpl2))) + +(define-public r-phyloseq + (package + (name "r-phyloseq") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "phyloseq" version)) + (sha256 + (base32 "0k0aj8f7g1vr7l0qcc507b3w67zc1k9x7sdblm7mjb20zqr3916s")))) + (properties `((upstream-name . "phyloseq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ade4" ,r-ade4) + ("r-ape" ,r-ape) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biomformat" ,r-biomformat) + ("r-biostrings" ,r-biostrings) + ("r-cluster" ,r-cluster) + ("r-data-table" ,r-data-table) + ("r-foreach" ,r-foreach) + ("r-ggplot2" ,r-ggplot2) + ("r-igraph" ,r-igraph) + ("r-multtest" ,r-multtest) + ("r-plyr" ,r-plyr) + ("r-reshape2" ,r-reshape2) + ("r-scales" ,r-scales) + ("r-vegan" ,r-vegan))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/joey711/phyloseq") + (synopsis "Handling and analysis of high-throughput microbiome census data") + (description + "Phyloseq provides a set of classes and tools to facilitate the import, +storage, analysis, and graphical display of microbiome census data.") + (license license:agpl3))) |