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authorNavid Afkhami <navid.afkhami@mdc-berlin.de>2022-12-22 00:14:05 +0100
committerRicardo Wurmus <rekado@elephly.net>2022-12-22 00:14:05 +0100
commitd07543b8862cecbbc6da69a1f3eda2eb605ccb2e (patch)
tree4bc777fdd21a77381de03f6eb30d15c4a9794c1b /gnu/packages
parent9e495087d24bcd57937cd79cf373a8bd13e1c240 (diff)
downloadguix-d07543b8862cecbbc6da69a1f3eda2eb605ccb2e.tar.gz
guix-d07543b8862cecbbc6da69a1f3eda2eb605ccb2e.zip
gnu: Add python-bamnostic.
* gnu/packages/bioinformatics.scm (python-bamnostic): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm19
1 files changed, 19 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d003822f30..f80f8b9842 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3670,6 +3670,25 @@ software to answer ad hoc questions.")
go-golang-org-x-image
go-golang-org-x-text))))
+(define-public python-bamnostic
+ (package
+ (name "python-bamnostic")
+ (version "1.1.8")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "bamnostic" version))
+ (sha256
+ (base32
+ "0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-pytest))
+ (home-page "https://github.com/betteridiot/bamnostic/")
+ (synopsis "Tool for binary alignment map, random access and parsing")
+ (description
+ "Bamnostic is a pure Python @dfn{Binary Alignment Map} (BAM) file parser
+and random access tool.")
+ (license license:bsd-3)))
+
(define-public exonerate
(package
(name "exonerate")