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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-07-28 12:18:00 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-08-01 16:08:11 +0200 |
| commit | c6800aa31efbda2590bc75a96595e8bce3cce41e (patch) | |
| tree | 8c662f1cac0e18f0fa62cc59eb0da3425a05a51b /gnu/packages | |
| parent | 7e3234cb709076c8f4514f8b9320a0585dd9c958 (diff) | |
| download | guix-c6800aa31efbda2590bc75a96595e8bce3cce41e.tar.gz guix-c6800aa31efbda2590bc75a96595e8bce3cce41e.zip | |
gnu: Add r-muscat.
* gnu/packages/bioconductor.scm (r-muscat): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8a3a38b36f..9517cee52e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4629,6 +4629,56 @@ TAB-Seq.") throughput genetic sequencing data sets using regression methods.") (license license:artistic2.0))) +(define-public r-muscat + (package + (name "r-muscat") + (version "1.10.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "muscat" version)) + (sha256 + (base32 + "1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd")))) + (properties `((upstream-name . "muscat"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-blme + r-complexheatmap + r-data-table + r-deseq2 + r-dplyr + r-edger + r-ggplot2 + r-glmmtmb + r-limma + r-lme4 + r-lmertest + r-matrix + r-matrixstats + r-progress + r-purrr + r-s4vectors + r-scales + r-scater + r-sctransform + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-variancepartition + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/HelenaLC/muscat") + (synopsis "Multi-sample multi-group scRNA-seq data analysis tools") + (description + "This package @code{muscat} provides various methods and visualization tools +for @dfn{DS}(differential splicing) analysis in multi-sample, multi-group, +multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and +methods based on aggregated \"pseudobulk\" data, as well as a flexible simulation +platform that mimics both single and multi-sample scRNA-seq data.") + (license license:gpl3))) + (define-public r-mutationalpatterns (package (name "r-mutationalpatterns") |