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authorRicardo Wurmus <rekado@elephly.net>2019-07-30 15:22:40 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-07-30 15:22:40 +0200
commitb46a0ee7532639817fe846233a75c758a9e7b963 (patch)
treedade4f8d5a9b29b9d36a2feecc19b4b4a06796e8 /gnu/packages
parent79f04920b220661dd0d31a40ca60b536c86d4d5e (diff)
downloadguix-b46a0ee7532639817fe846233a75c758a9e7b963.tar.gz
guix-b46a0ee7532639817fe846233a75c758a9e7b963.zip
gnu: Add r-cicero.
* gnu/packages/bioconductor.scm (r-cicero): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm41
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2f2a60ad19..98a2da21c9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5024,3 +5024,44 @@ with separating information will be identified, and these clusters are defined
by a sparse number of variables, this method can reduce the complexity of
data, to only emphasize the data that actually matters.")
(license license:expat)))
+
+(define-public r-cicero
+ (package
+ (name "r-cicero")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "cicero" version))
+ (sha256
+ (base32
+ "0f15l8zrh7l7nnvznb66116hvfk15djb9q240vbscm2w0y5fvkcr"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-data-table" ,r-data-table)
+ ("r-dplyr" ,r-dplyr)
+ ("r-fnn" ,r-fnn)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-glasso" ,r-glasso)
+ ("r-gviz" ,r-gviz)
+ ("r-igraph" ,r-igraph)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-monocle" ,r-monocle)
+ ("r-plyr" ,r-plyr)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-vgam" ,r-vgam)))
+ (home-page "https://bioconductor.org/packages/cicero/")
+ (synopsis "Predict cis-co-accessibility from single-cell data")
+ (description
+ "Cicero computes putative cis-regulatory maps from single-cell chromatin
+accessibility data. It also extends the monocle package for use in chromatin
+accessibility data.")
+ (license license:expat)))