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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-03-18 12:16:17 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-04-11 11:03:27 +0200
commitae2462f7dd8abfdd6e5a603c55443ec5246936f0 (patch)
tree46e0240af4b8472a0e612455ba5b746803261f2e /gnu/packages
parentc90a4baff6cbc35ccd6af3cdac72f314c9eceab3 (diff)
downloadguix-ae2462f7dd8abfdd6e5a603c55443ec5246936f0.tar.gz
guix-ae2462f7dd8abfdd6e5a603c55443ec5246936f0.zip
gnu: Add r-motifrg.
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58268dc258..4ea7534568 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4800,6 +4800,33 @@ Stephens (1990).")
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-motifrg
+ (package
+ (name "r-motifrg")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifRG" version))
+ (sha256
+ (base32
+ "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn"))))
+ (properties `((upstream-name . "motifRG")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome.hsapiens.ucsc.hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-xvector" ,r-xvector)))
+ (home-page "http://bioconductor.org/packages/motifRG")
+ (synopsis "Discover motifs in high throughput sequencing data")
+ (description
+ "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")