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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-28 16:08:32 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-29 20:09:31 +0200 |
| commit | 9b03d78000c37fea744b4fdf0802b005f12b4ad9 (patch) | |
| tree | a7b499d5958212feb3bddd5927b6c65f8ac90433 /gnu/packages | |
| parent | 9619504c8161c6a4f691bff96064e1700dc4d21d (diff) | |
| download | guix-9b03d78000c37fea744b4fdf0802b005f12b4ad9.tar.gz guix-9b03d78000c37fea744b4fdf0802b005f12b4ad9.zip | |
gnu: r-glimma: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.10.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 58 |
1 files changed, 55 insertions, 3 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0a55248fc3..3dad3327d9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10619,16 +10619,68 @@ defined categories which are over/under represented in RNA-seq data.") (define-public r-glimma (package (name "r-glimma") - (version "2.8.0") + (version "2.10.0") (source (origin (method url-fetch) (uri (bioconductor-uri "Glimma" version)) (sha256 (base32 - "1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22")))) + "0171wizl516chzzwnbc2z2bf5sk4a491fcs4yhq5ycqaqpjmbg35")) + (modules '((guix build utils))) + (snippet + '(with-directory-excursion "inst/htmlwidgets/lib/" + (for-each delete-file + ;; XXX: we keep inst/v1/js/glimma.min.js because + ;; it's not clear how to build it. + (cons "vega/vega.min.js" + (find-files "datatables" + "\\.min\\.js$"))))))) (properties `((upstream-name . "Glimma"))) (build-system r-build-system) + (arguments + (list + #:modules '((guix build utils) + (guix build r-build-system) + (srfi srfi-1)) + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/htmlwidgets/lib/" + (let ((files (list "datatables/Buttons-1.6.1/js/buttons.bootstrap.js" + "datatables/Buttons-1.6.1/js/buttons.bootstrap4.js" + "datatables/Buttons-1.6.1/js/buttons.colVis.js" + "datatables/Buttons-1.6.1/js/buttons.flash.js" + "datatables/Buttons-1.6.1/js/buttons.foundation.js" + "datatables/Buttons-1.6.1/js/buttons.html5.js" + "datatables/Buttons-1.6.1/js/buttons.jqueryui.js" + "datatables/Buttons-1.6.1/js/buttons.print.js" + "datatables/Buttons-1.6.1/js/buttons.semanticui.js" + "datatables/Buttons-1.6.1/js/dataTables.buttons.js" + "datatables/DataTables-1.10.20/js/dataTables.bootstrap.js" + "datatables/DataTables-1.10.20/js/dataTables.bootstrap4.js" + "datatables/DataTables-1.10.20/js/dataTables.foundation.js" + "datatables/DataTables-1.10.20/js/dataTables.jqueryui.js" + "datatables/DataTables-1.10.20/js/dataTables.semanticui.js" + "datatables/DataTables-1.10.20/js/jquery.dataTables.js" + "datatables/JSZip-2.5.0/jszip.js" + "datatables/Scroller-2.0.1/js/dataTables.scroller.js" + "datatables/Scroller-2.0.1/js/scroller.bootstrap.js" + "datatables/Scroller-2.0.1/js/scroller.bootstrap4.js" + "datatables/Scroller-2.0.1/js/scroller.foundation.js" + "datatables/Scroller-2.0.1/js/scroller.jqueryui.js" + "datatables/Scroller-2.0.1/js/scroller.semanticui.js" + "datatables/datatables.js" + "datatables/jQuery-1.12.4/jquery-1.12.4.js" + "vega/vega.js"))) + (for-each (lambda (source) + (let ((target (string-append (basename source ".js") ".min.js"))) + (format #true "Processing ~a --> ~a~%" + source target) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target)))) + files)))))))) (propagated-inputs (list r-deseq2 r-edger @@ -10638,7 +10690,7 @@ defined categories which are over/under represented in RNA-seq data.") r-s4vectors r-summarizedexperiment)) (native-inputs - (list r-knitr)) + (list esbuild r-knitr)) (home-page "https://github.com/Shians/Glimma") (synopsis "Interactive HTML graphics") (description |