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authorRicardo Wurmus <rekado@elephly.net>2023-05-14 13:39:05 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-05-14 13:39:05 +0200
commit8ec227471a40ec52dd8a6ccb6c861b656de34251 (patch)
tree582071fc00d909fca8475e0e199d9d2c92afebc8 /gnu/packages
parent6754eb339c559d27beed718e16ec001ef38483fa (diff)
downloadguix-8ec227471a40ec52dd8a6ccb6c861b656de34251.tar.gz
guix-8ec227471a40ec52dd8a6ccb6c861b656de34251.zip
gnu: diamond: Update to 2.1.6.
* gnu/packages/bioinformatics.scm (diamond): Update to 2.1.6. [arguments]: Do not disable tests; pass configure flag to avoid SSE4 and AVX2 in the interest of compatibility. [license]: Set to GPLv3+.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm17
1 files changed, 5 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 13f16ce026..8267ae12ac 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4212,7 +4212,7 @@ bases are detected.")
(define-public diamond
(package
(name "diamond")
- (version "0.9.30")
+ (version "2.1.6")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -4221,18 +4221,11 @@ bases are detected.")
(file-name (git-file-name name version))
(sha256
(base32
- "0k6f3kb6cniw11xw6763kkbs1sl0yack7xsy7q5fl5v170ssphq4"))))
+ "0kb17jwlsrvgswfahzznrffv1i6ybwwmq99qs7iga5yzbx64jp6q"))))
(build-system cmake-build-system)
(arguments
- '(#:tests? #f ; no "check" target
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'remove-native-compilation
- (lambda _
- (substitute* "CMakeLists.txt" (("-march=native") ""))
- #t)))))
- (inputs
- (list zlib))
+ (list #:configure-flags '(list "-DX86=OFF"))) ;avoid SSE4 and AVX2
+ (inputs (list zlib))
(home-page "https://github.com/bbuchfink/diamond")
(synopsis "Accelerated BLAST compatible local sequence aligner")
(description
@@ -4241,7 +4234,7 @@ translated DNA query sequences against a protein reference database (BLASTP
and BLASTX alignment mode). The speedup over BLAST is up to 20,000 on short
reads at a typical sensitivity of 90-99% relative to BLAST depending on the
data and settings.")
- (license license:agpl3+)))
+ (license license:gpl3+)))
(define-public discrover
(package