aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2020-12-07 16:01:24 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-09 12:12:48 +0100
commit7601015fc9d51a2f2ecdd676bcae51ed7121d30d (patch)
tree73925adca653d6c2c304fb69ba5054fd4f24ab4e /gnu/packages
parentcde035e67f3f5aba866c64b895b8a6aa234692ad (diff)
downloadguix-7601015fc9d51a2f2ecdd676bcae51ed7121d30d.tar.gz
guix-7601015fc9d51a2f2ecdd676bcae51ed7121d30d.zip
gnu: r-delayedmatrixstats: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1. [propagated-inputs]: Add r-matrixgenerics.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm5
1 files changed, 3 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 89ebbe530a..5f524f310c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8982,14 +8982,14 @@ data in the column sparse format.")
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")
- (version "1.12.0")
+ (version "1.12.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DelayedMatrixStats" version))
(sha256
(base32
- "0xgjamxwf9wwy6dc138mxx5xgjhq5d2z7irliyxbmpaf5kicnwyi"))))
+ "1cyvj6ffl10vaiip146dldc1w8if854kpz9nhi50ndhpkmdb8sa0"))))
(properties
`((upstream-name . "DelayedMatrixStats")))
(build-system r-build-system)
@@ -8999,6 +8999,7 @@ data in the column sparse format.")
("r-hdf5array" ,r-hdf5array)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
+ ("r-matrixgenerics" ,r-matrixgenerics)
("r-matrixstats" ,r-matrixstats)
("r-s4vectors" ,r-s4vectors)
("r-sparsematrixstats" ,r-sparsematrixstats)))
3ed66dcd31f72e76762bcb9111f2aadc'>gnu: icedtea6: Replace "ant-bootstrap" with "ant"....* gnu/packages/java.scm (icedtea6)[native-inputs]: Replace "ant-bootstrap" with "ant". [arguments]: Remove steps to unpack and use "ant-bootstrap". (icedtea7)[native-inputs]: Remove explicit references to "ant-bootstrap" and "ant". Ricardo Wurmus 2015-10-13gnu: ant: Build with GCJ....* gnu/packages/java.scm (ant)[native-inputs]: Replace "icedtea6" with "gcj". Ricardo Wurmus 2015-10-13gnu: gcj-4.8, gcj: Update to default GCC version....* gnu/packages/gcc.scm (gcj-4.8): Inherit from "gcc" package and rename variable to... (gcj): ...this new variable. (ecj-bootstrap-4.8): Rename variable to... (ecj-bootstrap): ...this, updating to version 4.9. * gnu/packages/java.scm (icedtea6)[native-inputs]: Replace "gcj-4.8" with "gcj". * gnu/packages/music.scm (tuxguitar)[native-inputs]: Likewise. Ricardo Wurmus 2015-08-29gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases....* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools, plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'. * gnu/packages/check.scm (catch-framework): Likewise. * gnu/packages/code.scm (global): Likewise. * gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools): Likewise. * gnu/packages/engineering.scm (fastcap, fasthenry): Likewise. * gnu/packages/gnuzilla.scm (nss): Likewise. * gnu/packages/guile.scm (guile-minikanren): Likewise. * gnu/packages/java.scm (swt): Likewise. * gnu/packages/make-bootstrap.scm (%static-binaries): Likewise. * gnu/packages/maths.scm (lpsolve): Likewise. * gnu/packages/mp3.scm (mpc123): Likewise. * gnu/packages/ninja.scm (ninja): Likewise. * gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise. * gnu/packages/screen.scm (dtach): Likewise. * gnu/packages/synergy.scm (synergy): Likewise. * gnu/packages/textutils.scm (utf8proc): Likewise. * gnu/packages/version-control.scm (git-test-sequence): Likewise. * gnu/packages/wicd.scm (wicd): Likewise. Ludovic Courtès 2015-07-27gnu: icedtea7: Update to 2.6.1....* gnu/packages/java.scm (icedtea7): Update to 2.6.1. Ricardo Wurmus 2015-06-12gnu: icedtea7: Bootstrap with GCJ....* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile with IcedTea6. Ricardo Wurmus 2015-05-12gnu: icedtea6: Add target-dependent include directory to CPATH....* gnu/packages/java.scm (gcj-4.8)[arguments]: Add target-dependent GCJ include directory to CPATH environment variable. Ricardo Wurmus 2015-04-28gnu: Add icedtea7....* gnu/packages/java.scm (icedtea7): New variable. Ricardo Wurmus 2015-04-27gnu: icedtea6: Split test fixing phases....* gnu/packages/java.scm (icedtea6)[arguments]: Split phase 'fix-tests into three phases 'fix-test-framework, 'fix-hotspot-tests, and 'fix-jdk-tests. Ricardo Wurmus 2015-04-21gnu: Add SWT....* gnu/packages/java.scm (swt): New variable. Ricardo Wurmus 2015-04-17Merge branch 'master' into core-updates...Conflicts: gnu-system.am gnu/packages/gstreamer.scm Mark H Weaver 2015-04-15gnu: icedtea6: Update to 1.13.7....* gnu/packages/java.scm (icedtea6): Update to version 1.13.7. Ricardo Wurmus 2015-04-14gnu: Disable RUNPATH validation for packages that use $ORIGIN....* gnu/packages/haskell.scm (ghc)[arguments]: Add #:validate-runpath?. * gnu/packages/julia.scm (julia)[arguments]: Likewise. * gnu/packages/java.scm (icedtea6)[arguments]: Likewise. Ludovic Courtès 2015-03-23gnu: icedtea6: remove commented substitution....* gnu/packages/java.scm (icedtea6): Remove commented substitution. Ricardo Wurmus 2015-03-23gnu: icedtea6: Do not set CC and LD_LIBRARY_PATH....* gnu/packages/java.scm (icedtea6)[arguments]: Do not set CC and LD_LIBRARY_PATH variables. Ricardo Wurmus 2015-03-23gnu: icedtea6: Rename ‘set-paths’ phase to ‘set-additional-paths’...* gnu/packages/java.scm (icedtea6)[arguments]: Rename ‘set-paths’ phase to ‘set-additional-paths’. Ricardo Wurmus 2015-03-23gnu: icedtea6: patch patches in separate build phase....* gnu/packages/java.scm (icedtea6)[arguments]: Move patching of patches from ‘patch-paths’ to new ‘patch-patches’ phase. Ricardo Wurmus 2015-03-23gnu: icedtea6: patch hardcoded objcopy path....* gnu/packages/java.scm (icedtea6)[arguments]: patch Makefile to override DEF_OBJCOPY variable definition. Ricardo Wurmus 2015-03-23gnu: icedtea6: patch ant shebang in unpack phase...* gnu/packages/java.scm (icedtea6)[arguments]: patch bootstrap ant in the `unpack' phase instead of `patch-paths'. Ricardo Wurmus 2015-03-04gnu: Move 'which' to (gnu packages base)....* gnu/packages/which.scm: Remove. * gnu-system.am (GNU_SYSTEM_MODULES): Remove it. * gnu/packages/base.scm (which): New variable. * gnu/packages/aspell.scm, gnu/packages/audio.scm, gnu/packages/autogen.scm, gnu/packages/cdrom.scm, gnu/packages/compression.scm, gnu/packages/datamash.scm, gnu/packages/games.scm, gnu/packages/glib.scm, gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/java.scm, gnu/packages/libevent.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/node.scm, gnu/packages/ntp.scm, gnu/packages/orpheus.scm, gnu/packages/pciutils.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/rsync.scm, gnu/packages/sawfish.scm, gnu/packages/scheme.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/texlive.scm, gnu/packages/wdiff.scm: Adjust accordingly. Ludovic Courtès 2015-03-04gnu: icedtea6: split outputs....* gnu/packages/java.scm (icedtea6)[outputs]: Use separate outputs for documentation ("doc"), JDK ("jdk"), and JRE ("out"). * gnu/packages/java.scm (ant)[native-inputs]: Reference "jdk" output of icedtea6 package. * gnu/packages/statistics.scm (r)[inputs]: Reference "jdk" output of icedtea6 package. Ricardo Wurmus 2015-02-19gnu: Add Ant....* gnu/packages/java.scm (ant): New variable. Ricardo Wurmus 2015-01-29gnu: Add IcedTea 6...* gnu/packages/java.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus