diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-19 23:40:14 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-19 23:55:43 +0100 |
| commit | 5c10649a50dd91f5ece816d949e4a751e8ba3777 (patch) | |
| tree | d940468edfb43de1e6272a766e4573a6f64cddca /gnu/packages | |
| parent | d084e9d0368078223886c69377370a12cb8d1fd4 (diff) | |
| download | guix-5c10649a50dd91f5ece816d949e4a751e8ba3777.tar.gz guix-5c10649a50dd91f5ece816d949e4a751e8ba3777.zip | |
gnu: Add r-structstrings.
* gnu/packages/bioconductor.scm (r-structstrings): New variable.
Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 5e7dcfd1f2..d46c86db13 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11400,6 +11400,40 @@ associations. Each interaction is associated with a combined confidence score that integrates the various evidences.") (license license:gpl2))) +(define-public r-structstrings + (package + (name "r-structstrings") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Structstrings" version)) + (sha256 + (base32 "10j1khhjd30wn9yfz4jhgx34z0yyijgwgydr8ric52337vwpx6dl")))) + (properties `((upstream-name . "Structstrings"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-biostrings + r-crayon + r-iranges + r-s4vectors + r-stringi + r-stringr + r-xvector)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/FelixErnst/Structstrings") + (synopsis "Implementation of the dot bracket annotations with Biostrings") + (description + "The Structstrings package implements the widely used dot bracket +annotation for storing base pairing information in structured +RNA. Structstrings uses the infrastructure provided by the Biostrings package +and derives the @code{DotBracketString} and related classes from the BString +class. From these, base pair tables can be produced for in depth analysis. +In addition, the loop indices of the base pairs can be retrieved as well. For +better efficiency, information conversion is implemented in C, inspired to a +large extend by the @code{ViennaRNA} package.") + (license license:artistic2.0))) + (define-public r-structuralvariantannotation (package (name "r-structuralvariantannotation") |