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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-08-28 17:23:18 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-08-28 17:59:37 +0200 |
| commit | 3e203183f85c1b957d90820202aa104cd757dbd3 (patch) | |
| tree | b781517122478d4eef23ffb78a1cab7be4daaa31 /gnu/packages | |
| parent | 3886a2b8b5f1236700a683895937432e11347f7d (diff) | |
| download | guix-3e203183f85c1b957d90820202aa104cd757dbd3.tar.gz guix-3e203183f85c1b957d90820202aa104cd757dbd3.zip | |
gnu: Add r-rtcga.
* gnu/packages/bioconductor.scm (r-rtcga): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a864bc91e9..4460b67fb8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9081,6 +9081,51 @@ tab-delimited (tabix) files.") "This package models a RESTful service as if it were a nested R list.") (license license:artistic2.0))) +(define-public r-rtcga + (package + (name "r-rtcga") + (version "1.30.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "RTCGA" version)) + (sha256 + (base32 + "1y7ciq1270dc1c9y490fygrsylyzwl52fqi1vj7r75hy3rnwnv25")))) + (properties `((upstream-name . "RTCGA"))) + (build-system r-build-system) + (propagated-inputs (list r-assertthat + r-data-table + r-dplyr + r-ggplot2 + r-ggthemes + r-htmltools + r-knitr + r-purrr + r-rcurl + r-rmarkdown + r-rvest + r-scales + r-stringi + r-survival + r-survminer + r-viridis + r-xml + r-xml2)) + (native-inputs (list r-knitr)) + (home-page "https://rtcga.github.io/RTCGA/") + (synopsis "The Cancer Genome Atlas data integration") + (description + "The Cancer Genome Atlas (TCGA) Data Portal provides a platform for +researchers to search, download, and analyze data sets generated by TCGA. It +contains clinical information, genomic characterization data, and high level +sequence analysis of the tumor genomes. The key is to understand genomics to +improve cancer care. RTCGA package offers download and integration of the +variety and volume of TCGA data using patient barcode key, what enables easier +data possession. This may have an benefcial infuence on impact on development +of science and improvement of patients treatment. Furthermore, RTCGA package +transforms TCGA data to tidy form which is convenient to use.") + (license license:gpl2))) + (define-public r-rtcgatoolbox (package (name "r-rtcgatoolbox") |