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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2021-03-05 02:20:39 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-05 16:07:06 +0100 |
| commit | 297531ef58ea91d167dac0474d02a538e8e6bc74 (patch) | |
| tree | 77e652ab49adf4f6af20f1da827fc60a0d0bf0c3 /gnu/packages | |
| parent | 1353e536054c3f7375d784885014add9b9ea990b (diff) | |
| download | guix-297531ef58ea91d167dac0474d02a538e8e6bc74.tar.gz guix-297531ef58ea91d167dac0474d02a538e8e6bc74.zip | |
gnu: Add r-circrnaprofiler.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9e426df99e..89b191585b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6810,6 +6810,59 @@ accessibility data.") ,@(alist-delete "r-monocle" (package-propagated-inputs r-cicero))))))) +(define-public r-circrnaprofiler + (package + (name "r-circrnaprofiler") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "circRNAprofiler" version)) + (sha256 + (base32 + "1rwpl9a5p5242aiapik0vf4ywqh7m6phzl8z8qmzcy0imbx7mpbn")))) + (properties + `((upstream-name . "circRNAprofiler"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationhub" ,r-annotationhub) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19) + ("r-deseq2" ,r-deseq2) + ("r-dplyr" ,r-dplyr) + ("r-edger" ,r-edger) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-gwascat" ,r-gwascat) + ("r-iranges" ,r-iranges) + ("r-magrittr" ,r-magrittr) + ("r-r-utils" ,r-r-utils) + ("r-readr" ,r-readr) + ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-seqinr" ,r-seqinr) + ("r-stringi" ,r-stringi) + ("r-stringr" ,r-stringr) + ("r-universalmotif" ,r-universalmotif))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page + "https://github.com/Aufiero/circRNAprofiler") + (synopsis + "Computational framework for the downstream analysis of circular RNA's") + (description + "@code{r-circrnaprofiler} is a computational framework for a comprehensive +in silico analysis of @dfn{circular RNA} (circRNAs). This computational +framework allows to combine and analyze circRNAs previously detected by +multiple publicly available annotation-based circRNA detection tools. It +covers different aspects of circRNAs analysis from differential expression +analysis, evolutionary conservation, biogenesis to functional analysis.") + (license license:gpl3))) + (define-public r-cistopic (let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950") (revision "0")) |