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authorRicardo Wurmus <rekado@elephly.net>2023-11-03 17:18:39 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-11-03 22:49:19 +0100
commitf76b1ecf163a24127eb515ea14d2bc1e0950ec02 (patch)
tree99caa9389b399fdfc86e6605588a3336bfb3f90d /gnu/packages/textutils.scm
parent41219277e14030144b9885687d3525476eef1b42 (diff)
downloadguix-f76b1ecf163a24127eb515ea14d2bc1e0950ec02.tar.gz
guix-f76b1ecf163a24127eb515ea14d2bc1e0950ec02.zip
gnu: r-diffbind: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.12.0. Change-Id: Ib2ca5f8fc3e6d360ac2907ee8a35b7e0ab34251a
Diffstat (limited to 'gnu/packages/textutils.scm')
0 files changed, 0 insertions, 0 deletions
a marker for field values that have not been set. Rationale: 'disabled may easily clash with user values for boolean fields, is confusing (i.e. its meaning is *not* boolean false, but unspecified) and it also passes silently through the symbol? predicate of a field of type symbol. * gnu/services/configuration.scm (configuration-missing-default-value): Renamed from configuration-no-default-value. (define-maybe-helper): Use *unspecified* instead of 'disabled, and make the default value optional. * gnu/home/services/desktop.scm (home-redshift-configuration): Change (maybe-xyz 'disabled) to maybe-xyz. * gnu/services/authentication.scm (nslcd-configuration): Likewise. * gnu/services/cgit.scm (repository-cgit-configuration): Likewise. * gnu/services/file-sharing.scm (serialize-maybe-string) (serialize-maybe-file-object): Use 'unspecified?' instead of (eq? val 'disabled). * gnu/services/messaging.scm (raw-content?): Likewise. (ssl-configuration): Change (maybe-xyz 'disabled) to maybe-xyz. (prosody-configuration): Likewise. * gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise. * gnu/services/messaging.scm (define-all-configurations): Use *unspecified* instead of 'disabled'. * gnu/services/networking.scm (opendht-configuration): Likewise. * gnu/services/pm.scm (tlp-configuration): Likewise. * gnu/services/telephony.scm (jami-account): Likewise. (jami-configuration): Likewise. * gnu/services/vpn.scm (openvpn-client-configuration): Likewise. * tests/services/configuration.scm ("maybe type, no default") ("maybe type, with default"): New tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Attila Lendvai 2022-06-10services: jami-configuration: Rename 'jamid' field to 'libjami'....* gnu/services/telephony.scm (gnu): (jami-configuration)[jamid]: Rename field to... [libjami]: ... this. (jami-configuration->command-line-arguments): Adjust accordingly. (jami-shepherd-services): Likewise. Maxim Cournoyer 2022-06-10services: jami: Modernize to adjust to Shepherd 0.9+ changes....This partially fixes <https://issues.guix.gnu.org/54786>, allowing the 'jami' and 'jami-provisioning' system tests to pass again. In version 0.9.0, Shepherd constructors are now run concurrently, via cooperative scheduling (Guile Fibers). The Jami service previously relied on blocking sleeps while polling for D-Bus services to become ready after forking a process; this wouldn't work anymore since while blocking the service process wouldn't be given the chance to finish starting. The new reliance on Fibers in Shepherd's fork+exec-command in the helper 'send-dbus' procedure also meant that it wouldn't work outside of Shepherd anymore. Finally, the 'start-service' Shepherd procedure used in the test suite would cause the Jami daemon to be spawned multiple times (a bug introduced in Shepherd 0.9.0). To fix/simplify these problems, this change does the following: 1. Use the Guile AC/D-Bus library for D-Bus communication, which simplify things, such as avoiding the need to fork 'dbus-send' processes. 2. The non-blocking 'sleep' version of Fiber is used for the 'with-retries' waiting syntax. 3. A 'dbus' package variant is used to adjust the session bus configuration, tailoring it for the use case at hand. 4. Avoid start-service in the tests, preferring 'jami-service-available?' for now. * gnu/build/jami-service.scm (parse-dbus-reply, strip-quotes) (deserialize-item, serialize-boolean, dbus-dict->alist) (dbus-array->list, parse-account-ids, parse-account-details) (parse-contacts): Delete procedures. (%send-dbus-binary, %send-dbus-bus, %send-dbus-user, %send-dbus-group) (%send-dbus-debug): Delete parameters. (jami-service-running?): New procedure. (send-dbus/configuration-manager): Rename to... (call-configuration-manager-method): ... this. Turn METHOD into a positional argument. Turn ARGUMENTS into an optional argument. Invoke `call-dbus-method' instead of `send-dbus', adjusting callers accordingly. (get-account-ids, id->account-details, id->account-details) (id->volatile-account-details, username->id, add-account remove-account) (username->contacts, remove-contact, add-contact, set-account-details) (set-all-moderators, username->all-moderators?, username->moderators) (set-moderator): Adjust accordingly. (with-retries, send-dbus, dbus-available-services) (dbus-service-available?): Move to ... * gnu/build/dbus-service.scm: ... this new module. (send-dbus): Rewrite to use the Guile AC/D-Bus library. (%dbus-query-timeout, sleep*): New variables. (%current-dbus-connection): New parameter. (initialize-dbus-connection!, argument->signature-type) (call-dbus-method): New procedures. (dbus-available-services): Adjust accordingly. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new module. * gnu/packages/glib.scm (dbus-for-jami): New variable. * gnu/services/telephony.scm: (jami-configuration)[dbus]: Default to dbus-for-jami. (jami-dbus-session-activation): Write a D-Bus daemon configuration file at '/var/run/jami/session-local.conf'. (jami-shepherd-services): Add the closure of guile-ac-d-bus and guile-fibers as extensions. Adjust imported modules. Remove no longer used parameters. <jami-dbus-session>: Use a PID file, avoiding the need for the manual synchronization. <jami>: Set DBUS_SESSION_BUS_ADDRESS environment variable. Poll using 'jami-service-available?' instead of 'dbus-service-available?'. * gnu/tests/telephony.scm (run-jami-test): Add needed Guile extensions. Set DBUS_SESSION_BUS_ADDRESS environment variable. Adjust all tests to use 'jami-service-available?' to determine if the service is started rather than the now problematic Shepherd's 'start-service'. Maxim Cournoyer 2022-04-12services: Replace murmur-service-type with mumble-server-service-type....* gnu/services/telephony.scm (murmur-configuration, make-murmur-configuration) (murmur-configuration?, murmur-configuration-package) (murmur-configuration-user, murmur-configuration-group) (murmur-configuration-port, murmur-configuration-welcome-text) (murmur-configuration-server-password) (murmur-configuration-max-users) (murmur-configuration-max-user-bandwidth) (murmur-configuration-database-file) (murmur-configuration-log-file, murmur-configuration-pid-file) (murmur-configuration-autoban-attempts) (murmur-configuration-autoban-timeframe) (murmur-configuration-autoban-time) (murmur-configuration-opus-threshold) (murmur-configuration-channel-nesting-limit) (murmur-configuration-channelname-regex) (murmur-configuration-username-regex) (murmur-configuration-test-message-length) (murmur-configuration-image-message-length) (murmur-configuration-cert-required?) (murmur-configuration-remember-channel?) (murmur-configuration-allow-html?) (murmur-configuration-allow-ping?) (murmur-configuration-bonjour?) (murmur-configuration-send-version?) (murmur-configuration-log-days) (murmur-configuration-obfuscate-ips?) (murmur-configuration-ssl-cert murmur-configuration-ssl-key) (murmur-configuration-ssl-dh-params murmur-configuration-ssl-ciphers) (murmur-configuration-public-registration) (murmur-configuration-file) (murmur-public-registration-configuration) (make-murmur-public-registration-configuration) (murmur-public-registration-configuration?) (murmur-public-registration-configuration-name) (murmur-public-registration-configuration-url) (murmur-public-registration-configuration-password) (murmur-public-registration-configuration-hostname) (murmur-service-type): Add deprecation alias and rename to ... (mumble-server-configuration, make-mumble-server-configuration) (mumble-server-configuration?, mumble-server-configuration-package) (mumble-server-configuration-user, mumble-server-configuration-group) (mumble-server-configuration-port, mumble-server-configuration-welcome-text) (mumble-server-configuration-server-password) (mumble-server-configuration-max-users) (mumble-server-configuration-max-user-bandwidth) (mumble-server-configuration-database-file) (mumble-server-configuration-log-file, mumble-server-configuration-pid-file) (mumble-server-configuration-autoban-attempts) (mumble-server-configuration-autoban-timeframe) (mumble-server-configuration-autoban-time) (mumble-server-configuration-opus-threshold) (mumble-server-configuration-channel-nesting-limit) (mumble-server-configuration-channelname-regex) (mumble-server-configuration-username-regex) (mumble-server-configuration-test-message-length) (mumble-server-configuration-image-message-length) (mumble-server-configuration-cert-required?) (mumble-server-configuration-remember-channel?) (mumble-server-configuration-allow-html?) (mumble-server-configuration-allow-ping?) (mumble-server-configuration-bonjour?) (mumble-server-configuration-send-version?) (mumble-server-configuration-log-days) (mumble-server-configuration-obfuscate-ips?) (mumble-server-configuration-ssl-cert mumble-server-configuration-ssl-key) (mumble-server-configuration-ssl-dh-params) (mumble-server-configuration-ssl-ciphers) (mumble-server-configuration-public-registration) (mumble-server-configuration-file) (mumble-server-public-registration-configuration) (make-mumble-server-public-registration-configuration) (mumble-server-public-registration-configuration?) (mumble-server-public-registration-configuration-name) (mumble-server-public-registration-configuration-url) (mumble-server-public-registration-configuration-password) (mumble-server-public-registration-configuration-hostname) (mumble-server-service-type): ... these. * doc/guix.texi ("Murmur (VoIP server)"): Rename to ... ("Mumble server"): ... this. Adjust documentation accordingly. Liliana Marie Prikler 2022-03-24services: murmur: Fix server program name....* gnu/services/telephony.scm (murmur-activation): (murmur-shepherd-service): Change file name of mumble server, which is now called mumble-server instead of murmurd since version 1.4.x. Co-authored-by: Ludovic Courtès <ludo@gnu.org> fesoj000 2022-01-13services: Adjust the jami service for the upgraded jami....* gnu/services/telephony.scm (jami-configuration)[jamid]: Rename libring to libjami. * gnu/services/telephony.scm (jami-configuration->command-line-arguments): Adjust daemon file name. * gnu/services/telephony.scm (jami-service-type): Adjust doc. * gnu/tests/telephony.scm (run-jami-test): Check for 'jamid' process, not 'dring'. * doc/guix.texi (Telephony Services): Adjust doc for the jami-qt to jami and libring to libjami packages renaming. Maxim Cournoyer 2021-11-30services: Accept <inferior-package>s in lieu of <package>s....* gnu/services/authentication.scm (fprintd-configuration) (nslcd-configuration): Substitute file-like objects for package ones. * gnu/services/cgit.scm (cgit-configuration, opaque-cgit-configuration): Likewise. * gnu/services/cups.scm (package-list?, cups-configuration): Likewise. * gnu/services/dns.scm (verify-knot-configuration) (ddclient-configuration): Likewise. * gnu/services/docker.scm (docker-configuration): Likewise. * gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise. * gnu/services/getmail.scm (getmail-configuration): Likewise. * gnu/services/mail.scm (dovecot-configuration) (opaque-dovecot-configuration): Likewise. * gnu/services/messaging.scm (prosody-configuration) (opaque-prosody-configuration): Likewise. * gnu/services/monitoring.scm (zabbix-server-configuration) (zabbix-agent-configuration): Likewise. * gnu/services/networking.scm (opendht-configuration): Likewise. * gnu/services/pm.scm (tlp-configuration): Likewise. * gnu/services/telephony.scm (jami-configuration): Likewise. * gnu/services/virtualization.scm (libvirt-configuration) (qemu-guest-agent-configuration): Likewise. * gnu/services/vpn.scm (openvpn-client-configuration): Likewise. Tobias Geerinckx-Rice 2021-08-02Reinstate "services: Add a service for Jami."...This reverts commit 4673f817938d9d2b1b40a072ab2e0c44a32ccc97, which reverted commit 69dcc24c9f0cdfea674eb690e7755d26a25ced2b with the fix detailed below. Thanks to Christopher Baines for reporting the failure and proposing a fix. * guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data files via the 'extra-files' argument. * gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat file to... * gnu/local.mk (MODULES_NOT_COMPILED): ... here. Maxim Cournoyer 2021-08-02Revert "services: Add a service for Jami."...This reverts commit 69dcc24c9f0cdfea674eb690e7755d26a25ced2b. It broke 'guix pull'. Maxim Cournoyer 2021-08-02services: Add a service for Jami....* gnu/services/telephony.scm (string-or-computed-file?) (string-list?, account-fingerprint-list?): New procedures. (maybe-string-list, maybe-account-fingerprint-list) (maybe-boolean, maybe-string, jami-account-list): New configuration field types. (serialize-string-list, serialize-boolean, serialize-string) (jami-account, jami-account->alist, jami-configuration) (jami-account-list?, jami-account-list-maybe): New procedures. (%jami-accounts): New variable. (jami-configuration->command-line-arguments): New procedure. (jami-dbus-session-activation, jami-shepherd-services): New procedures. (jami-service-type): New variable. * gnu/build/jami-service.scm: New file. * gnu/tests/data/jami-dummy-account.dat: Likewise. * gnu/tests/telephony.scm: Likewise. * gnu/local.mk (GNU_SYSTEM_MODULES): Register them. * Makefile.am (SCM_TESTS): Register the test file. (dist_patch_DATA): Register the new data file. * doc/guix.texi (Telephony Services): Document it. Maxim Cournoyer