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authorRicardo Wurmus <rekado@elephly.net>2024-01-08 20:18:02 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-16 12:44:35 +0100
commit82b7c3077f3f7eb705432bfa1e7e03f863ee2872 (patch)
tree02d25a91692ee7dc4af6109248fd3ce0caed2bb8 /gnu/packages/re2c.scm
parentc7646437a2616f2167e6b54c6e9e4d90a31027f4 (diff)
downloadguix-82b7c3077f3f7eb705432bfa1e7e03f863ee2872.tar.gz
guix-82b7c3077f3f7eb705432bfa1e7e03f863ee2872.zip
gnu: python-matplotlib: Update to 3.8.2.
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.8.2. [build-system]: Use pyproject-build-system. [arguments]: Enable more tests; simplify custom 'check phase. [propagated-inputs]: Remove gobject-introspection, python-cairocffi, python-certifi, python-pygobject, python-pytz, python-six, and python-wxpython; add python-contourpy and python-importlib-resources. [native-inputs]: Add pybind11. Change-Id: Ie34826882fdcc20fac3b09130bcd0f4ad4f76b07
Diffstat (limited to 'gnu/packages/re2c.scm')
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in call to ... * gnu/build/image.scm (initialize-root-partition): ... this, add #:wal-mode? parameter, pass it to ... (register-closure): ... this, add #:wal-mode? parameter, pass it to ... * guix/store/database.scm (with-database): ... this, add #:wal-mode? parameter, pass it to ... (call-with-database): ... this, add #:wal-mode? parameter; when set to #f, do not set journal_model=WAL. Jan (janneke) Nieuwenhuizen 2020-06-25deduplication: Leave the store permissions unchanged....Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>. * guix/store/deduplication.scm (call-with-writable-file): Call THUNK directly when FILE is (%store-directory). Ludovic Courtès 2020-06-25deduplication: Fix default value of #:store in 'deduplicate'....* guix/store/deduplication.scm (deduplicate): Change #:store default value to (%store-directory). Ludovic Courtès 2020-06-25deduplication: Use 'dynamic-wind' when changing permissions of the parent....Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>. * guix/store/deduplication.scm (call-with-writable-file): New procedure. (with-writable-file): New macro. (replace-with-link): Use it. Ludovic Courtès 2020-06-22deduplicate: Avoid traversing directories twice....Until now, we'd call (nar-sha256 file) unconditionally. Thus, if FILE was a directory, we would traverse it for no reason, and then call 'deduplicate' on FILE, which would again traverse it. This change also removes redundant (mkdir-p store) calls from the loop, and avoids 'lstat' calls by using 'scandir*'. * guix/store/deduplication.scm (deduplicate): Add named loop. Move 'mkdir-p' outside the loop. Use 'scandir*' instead of 'scandir'. Do not call 'nar-sha256' when FILE has type 'directory. Ludovic Courtès 2020-06-18database: 'register-items' takes an open database....* guix/store/database.scm (store-database-directory) (store-database-file): New procedures. (call-with-database): Add call to 'mkdir-p'. (register-items): Add 'db' parameter and remove #:state-directory and #:schema. (register-path): Use 'store-database-file' and 'with-database', and parameterize SQL-SCHEMA. * gnu/build/image.scm (register-closure): Likewise. * gnu/build/vm.scm (register-closure): Likewise. * guix/scripts/pack.scm (store-database)[build]: Likewise. Ludovic Courtès 2020-06-10database: separate transaction-handling and retry-handling....Previously call-with-transaction would both retry when SQLITE_BUSY errors were thrown and do what its name suggested (start and rollback/commit a transaction). This changes it to do only what its name implies, which simplifies its implementation. Retrying is provided by the new call-with-SQLITE_BUSY-retrying procedure. * guix/store/database.scm (call-with-transaction): no longer restarts, new #:restartable? argument controls whether "begin" or "begin immediate" is used. (call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction, call-with-retrying-savepoint): new procedures. (register-items): use call-with-retrying-transaction to preserve old behavior. * .dir-locals.el (call-with-retrying-transaction, call-with-retrying-savepoint): add indentation information. Caleb Ristvedt 2020-06-10database: ensure update-or-insert is run within a transaction...update-or-insert can break if an insert occurs between when it decides whether to update or insert and when it actually performs that operation. Putting the check and the update/insert operation in the same transaction ensures that the update/insert will only succeed if no other write has occurred in the middle. * guix/store/database.scm (call-with-savepoint): new procedure. (update-or-insert): use call-with-savepoint to ensure the read and the insert/update occur within the same transaction. Caleb Ristvedt 2020-06-10database: rewrite query procedures in terms of with-statement....Most of our queries would fail to finalize their statements properly if sqlite returned an error during their execution. This resolves that, and also makes them somewhat more concise as a side-effect. This also makes some small changes to improve certain queries where behavior was strange or overly verbose. * guix/store/database.scm (call-with-statement): new procedure. (with-statement): new macro. (last-insert-row-id, path-id, update-or-insert, add-references): rewrite to use with-statement. (update-or-insert): factor last-insert-row-id out of the end of both branches. (add-references): remove pointless last-insert-row-id call. * .dir-locals.el (with-statement): add indenting information. Caleb Ristvedt 2020-06-10database: work around guile-sqlite3 bug preventing statement reset...guile-sqlite3 provides statement caching, making it unnecessary for sqlite to keep re-preparing statements that are frequently used. Unfortunately it doesn't quite emulate the semantics of sqlite_finalize properly, because it doesn't cause a commit if the statement being finalized is the last "active" statement (see https://notabug.org/guile-sqlite3/guile-sqlite3/issues/12). We work around this by wrapping sqlite-finalize with our own version that ensures sqlite-reset is called, which does The Right Thing™. * guix/store/database.scm (sqlite-finalize): new procedure that shadows the sqlite-finalize from (sqlite3). Caleb Ristvedt 2020-04-11database: 'reset-timestamps' can optionally preserve permissions....* guix/store/database.scm (reset-timestamps): Add #:preserve-permissions? and honor it. Ludovic Courtès 2020-02-22deduplication: Use nix-base32 encoding for link names....Fixes <https://bugs.gnu.org/39725>. * guix/store/deduplication.scm (deduplicate): Use 'bytevector->nix-base32-string' instead of 'bytevector->base16-string'. Ludovic Courtès 2019-09-08daemon: Invoke 'guix gc --list-busy' instead of 'list-runtime-roots'....* nix/scripts/list-runtime-roots.in: Remove. * guix/store/roots.scm (%proc-directory): New variable. (proc-file-roots, proc-exe-roots, proc-cwd-roots) (proc-fd-roots, proc-maps-roots, proc-environ-roots) (referenced-files, canonicalize-store-item, busy-store-items): New procedures, taken from 'list-runtime-roots.in'. * nix/libstore/globals.hh (Settings)[guixProgram]: New field. * nix/libstore/globals.cc (Settings::processEnvironment): Initialize 'guixProgram'. * nix/libstore/gc.cc (addAdditionalRoots): Drop code related to 'NIX_ROOT_FINDER'. Run "guix gc --list-busy". * nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove 'scripts/list-runtime-roots'. * config-daemon.ac: Don't output nix/scripts/list-runtime-roots. * build-aux/pre-inst-env.in: Don't set 'NIX_ROOT_FINDER'. Set 'GUIX'. * doc/guix.texi (Invoking guix gc): Document '--list-busy'. * guix/scripts/gc.scm (show-help, %options): Add "--list-busy". (guix-gc)[list-busy]: New procedure. Handle the 'list-busy' action. Ludovic Courtès 2019-04-25gnu, guix: Yearly ritual purging of the filesystems....* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file system’ spelling. * gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise. * gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]: Likewise & edit for grammar. * gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise. * /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise. * gnu/packages/linux.scm (fuseiso)[description]: Likewise. (genext2fs)[synopsis, description]: Likewise. * gnu/packages/package-management.scm (libostree)[description]: Likewise. * gnu/packages/python-xyz.scm (python-requests-file)[description]: Likewise & mark up. * gnu/packages/rails.scm (ruby-with-advisory-lock)[description]: Likewise. * gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise. * guix/build/go-build-system.scm (setup-go-environment)<docstring>: Likewise. * guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise. Tobias Geerinckx-Rice 2019-04-10Add (guix store roots)....* guix/store/roots.scm, tests/store-roots.scm: New files. * Makefile.am (STORE_MODULES): Add guix/store/roots.scm. (SCM_TESTS): Add tests/store-roots.scm. Ludovic Courtès 2019-03-07database: Make 'register-items' transactional....* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables. (add-references): Don't try finalizing after each use, only after all the uses (otherwise a finalized statement would be used if #:cache? was #f). (call-with-transaction): New procedure. (register-items): Use call-with-transaction to prevent broken intermediate states from being visible. * .dir-locals.el (call-with-transaction): indent it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Caleb Ristvedt 2019-01-23deduplication: Ignore EMLINK....Until now 'guix offload' would fail (transient failure) upon EMLINK. * guix/store/deduplication.scm (replace-with-link) (deduplicate): Ignore EMLINK. Ludovic Courtès 2018-12-21database: Use "write-ahead log" mode and set a long "busy timeout"....This should avoid "database is locked" errors when there's a lot of concurrency, for instance when offloading simultaneously a lot of builds. * guix/store/database.scm (call-with-database): Add two 'sqlite-exec' calls to set 'journal_mode' and 'busy_timeout'. Ludovic Courtès 2018-12-14deduplication: Gracefully handle ENOSPC raised by 'link' calls....Reported by Andreas Enge <andreas@enge.fr> in <https://bugs.gnu.org/33676>. * guix/store/deduplication.scm (replace-with-link): Catch ENOSPC around 'get-temp-link'. Do nothing when 'get-temp-link' throws ENOSPC. Move code to restore PARENT's permissions outside of 'catch'. * tests/store-deduplication.scm ("deduplicate, ENOSPC"): New test. Ludovic Courtès 2018-11-23Update Guile-SQLite3 URL everywhere....* README: Update Guile-SQLite3 URL. * doc/guix.texi (Requirements): Likewise. * guix/store/database.scm (sqlite-exec): Likewise. * m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): Likewise. Ludovic Courtès 2018-11-13deduplication: Restore directory mtime and permissions after deduplication....Fixes <https://bugs.gnu.org/33361>. * guix/store/deduplication.scm (replace-with-link): Call 'set-file-time' and 'chmod' after 'rename-file'. * tests/nar.scm ("restore-file-set with directories (signed, valid)"): New test. Ludovic Courtès 2018-11-13nar: Access the database instead of connecting to the daemon....* guix/store/database.scm (%default-database-file): New variable. (path-id): Export. * guix/nar.scm (finalize-store-file): Use 'with-database' instead of 'with-store', and use 'path-id' instead of 'valid-path?'. Ludovic Courtès