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author | Ricardo Wurmus <rekado@elephly.net> | 2021-09-29 22:42:25 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-09-29 23:43:32 +0200 |
commit | 3ee0b3ca566f291d3131e6543158de7f94cc85bd (patch) | |
tree | f4f601d41792abb9efc3eb977f5f2a16aa1ec7e1 /gnu/packages/python-science.scm | |
parent | aa4885b3fb652b42762e587372d8154db2f47620 (diff) | |
download | guix-3ee0b3ca566f291d3131e6543158de7f94cc85bd.tar.gz guix-3ee0b3ca566f291d3131e6543158de7f94cc85bd.zip |
gnu: python2-pandas: Fix build by reverting inherited fields.
* gnu/packages/python-science.scm (python2-pandas)[arguments]: Do not inherit
field; revert to values at commit c0d43f62232507b441edf28c3f051921dfb04c2a.
[propagated-inputs]: Do not inherit.
[inputs]: Same.
[native-inputs]: Same.
Diffstat (limited to 'gnu/packages/python-science.scm')
-rw-r--r-- | gnu/packages/python-science.scm | 57 |
1 files changed, 55 insertions, 2 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 738b504e3b..cc6a759e82 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -453,8 +453,61 @@ doing practical, real world data analysis in Python.") ;; from <https://github.com/pandas-dev/pandas/pull/29294>. (substitute* "pandas/io/parsers.py" (("if 'NULL byte' in msg:") - "if 'NULL byte' in msg or 'line contains NUL' in msg:")) - #t))))))) + "if 'NULL byte' in msg or 'line contains NUL' in msg:")))))) + (arguments + `(#:modules ((guix build utils) + (guix build python-build-system) + (ice-9 ftw) + (srfi srfi-26)) + #:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-which + (lambda* (#:key inputs #:allow-other-keys) + (let ((which (assoc-ref inputs "which"))) + (substitute* "pandas/io/clipboard/__init__.py" + (("^CHECK_CMD = .*") + (string-append "CHECK_CMD = \"" which "\"\n")))))) + (replace 'check + (lambda _ + (let ((build-directory + (string-append + (getcwd) "/build/" + (car (scandir "build" + (cut string-prefix? "lib." <>)))))) + ;; Disable the "strict data files" option which causes + ;; the build to error out if required data files are + ;; not available (as is the case with PyPI archives). + (substitute* "setup.cfg" + (("addopts = --strict-data-files") "addopts = ")) + (with-directory-excursion build-directory + ;; Delete tests that require "moto" which is not yet + ;; in Guix. + (for-each delete-file + '("pandas/tests/io/conftest.py" + "pandas/tests/io/json/test_compression.py" + "pandas/tests/io/parser/test_network.py" + "pandas/tests/io/test_parquet.py")) + (invoke "pytest" "-vv" "pandas" "--skip-slow" + "--skip-network" "-k" + ;; XXX: Due to the deleted tests above. + "not test_read_s3_jsonl")))))))) + (propagated-inputs + `(("python-numpy" ,python2-numpy) + ("python-openpyxl" ,python2-openpyxl) + ("python-pytz" ,python2-pytz) + ("python-dateutil" ,python2-dateutil) + ("python-xlrd" ,python2-xlrd))) + (inputs + `(("which" ,which))) + (native-inputs + `(("python-cython" ,python2-cython) + ("python-beautifulsoup4" ,python2-beautifulsoup4) + ("python-lxml" ,python2-lxml) + ("python-html5lib" ,python2-html5lib) + ("python-nose" ,python2-nose) + ("python-pytest" ,python2-pytest) + ("python-pytest-mock" ,python2-pytest-mock)))))) (define-public python-pyflow (package |