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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-02-28 01:07:34 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-02 12:58:26 +0100 |
commit | a7763e067d86908210758aab80d33e4f8b815b1c (patch) | |
tree | 2d4a2c70fdeb7528bc2f9d36bd2ad81daef38baf /gnu/packages/cran.scm | |
parent | 06f49a77a8ea17c5b134aa29ad9afbae7ffda55d (diff) | |
download | guix-a7763e067d86908210758aab80d33e4f8b815b1c.tar.gz guix-a7763e067d86908210758aab80d33e4f8b815b1c.zip |
gnu: Add r-chromomap.
* gnu/packages/cran.scm (r-chromomap): New variable.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6dced3b93e..16314b33d7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -306,6 +306,42 @@ are included as well.") ;; Any version of the GPL. (license license:gpl3+))) +;; The package sources include multiple non-minified JavaScript files and the +;; v5.1.0 variant of d3.js. The d3.js file is not minified. +(define-public r-chromomap + (package + (name "r-chromomap") + (version "4.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "chromoMap" version)) + (sha256 + (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43")))) + (properties `((upstream-name . "chromoMap"))) + (build-system r-build-system) + (propagated-inputs (list r-htmltools r-htmlwidgets)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=chromoMap") + (synopsis "Interactive genomic visualization of biological data") + (description + "This package provides interactive, configurable and graphics +visualization of the chromosome regions of any living organism allowing users +to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It +introduces a special plot viz. the \"chromosome heatmap\" that, in addition to +mapping elements, can visualize the data associated with chromosome +elements (like gene expression) in the form of heat colors. Users can +investigate the detailed information about the mappings (like gene names or +total genes mapped on a location) or can view the magnified single or double +stranded view of the chromosome at a location showing each mapped element in +sequential order. The package provide multiple features like visualizing +multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and +labelling. The plots can be saved as HTML documents that can be customized +and shared easily. In addition, you can include them in R Markdown or in R +Shiny applications.") + (license (list license:gpl3 + license:isc)))) ;for bundled d3js + (define-public r-collections (package (name "r-collections") |