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authorRicardo Wurmus <rekado@elephly.net>2018-12-04 16:20:59 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-12-04 16:21:50 +0100
commit42c3e00c20dbc9fbdd938ddf6d5d88a92d622b77 (patch)
tree9a92d740f081a0c9804d97b7c24d32862a283b0b /gnu/packages/bootstrap/aarch64-linux/xz
parent4ebfe99a3fc24d7139bd53fab6e1529f5a6d7184 (diff)
downloadguix-42c3e00c20dbc9fbdd938ddf6d5d88a92d622b77.tar.gz
guix-42c3e00c20dbc9fbdd938ddf6d5d88a92d622b77.zip
gnu: pigx-rnaseq: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5. [inputs]: Replace snakemake-4 with snakemake.
Diffstat (limited to 'gnu/packages/bootstrap/aarch64-linux/xz')
0 files changed, 0 insertions, 0 deletions
e.scm: Do not check for lzlib availability. * tests/utils.scm: Ditto. * tests/zlib.scm: Remove it. Mathieu Othacehe 2020-07-20ssh: Speed up RPCs by using #:nodelay....Partly fixes <https://bugs.gnu.org/41702>. * guix/ssh.scm (open-ssh-session): Enable #:nodelay. * m4/guix.m4 (GUIX_CHECK_GUILE_SSH): Add feature check for this new parameter. * doc/guix.texi (Requirements): Adjust. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun 2020-05-28doc: Remove explicit support for mips64el-linux....It's been a good run, but no one is maintaining the architecture. So long, and thanks for all the fish. * doc/guix.texi (GNU Distribution): Change text for mips64el-linux to denote it is deprecated. (Daemon Offload Setup): Change occurrences of mips64el-linux to aarch64-linux and adjust local code snippets. (Guix Environment)[cross-compilation]: Change mips64el-linux-gnu to aarch64-linux-gnu. (GNU Build System)(package-cross-derivation]: Same. (G-Expressions)[cross compilation]: Same. (Additional Build Options)[cross-compilation, build logs]: Same. (qemu-binfmt-service-type): Remove mips64el. * doc/contributing.texi (Submitting Patches): Same. * m4/guix.m4: (GUIX_ASSERT_SUPPORTED_SYSTEM): Remove mips64el-linux. Efraim Flashner 2020-05-28maint: Check whether Guile-Gcrypt is recent enough....Suggested by Danny Milosavljevic <dannym@scratchpost.org> in <https://bugs.gnu.org/41494>. * m4/guix.m4 (GUIX_CHECK_GUILE_GCRYPT): New macro. * configure.ac: Use it. Ludovic Courtès 2020-02-22build: Depend on guile-ssh 0.12.0...This is a followup to 35f35111678e6622301b414f3d464acb71e106bb. * m4/guix.m4 (GUIX_CHECK_GUILE_SSH): Check for userauth-gssapi! * doc/guix.texi: Document version requirement Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun 2019-08-17build: 'GUIX_CHECK_GUILE_JSON' really checks for Guile-JSON 3.x....Until now the 'guile' process would always exit with 0, as long as Guile-JSON is installed, whether it's version 1 or version 3. * m4/guix.m4 (GUIX_CHECK_GUILE_JSON): Fix array syntax and remove catch-all 'match' clause. Ludovic Courtès 2019-07-25maint: Switch to Guile-JSON 3.x....Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on until now: it maps JSON dictionaries to alists (instead of hash tables), and JSON arrays to vectors (instead of lists). This commit is about adjusting all the existing code to this new mapping. * m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro. * configure.ac: Use it. * doc/guix.texi (Requirements): Mention the Guile-JSON version. * guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3. * guix/import/cpan.scm (string->license): Expect vectors instead of lists. (module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'. (cpan-fetch): Likewise. * guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list' for DEPS. * guix/import/gem.scm (rubygems-fetch): Likewise. * guix/import/json.scm (json-fetch-alist): Remove. * guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (latest-source-release, latest-wheel-release): Call 'vector->list' on RELEASES. * guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (lts-package-version): Use 'vector->list'. * guix/import/utils.scm (hash-table->alist): Remove. (alist->package): Pass 'vector->list' on the inputs fields, and default to the empty vector. * guix/scripts/import/json.scm (guix-import-json): Remove call to 'hash-table->alist'. * guix/swh.scm (define-json-reader): Expect pair? or null? instead of hash-table?. [extract-field]: Use 'assoc-ref' instead of 'hash-ref'. (json->branches): Use 'map' instead of 'hash-map->list'. (json->checksums): Likewise. (json->directory-entries, origin-visits): Call 'vector->list' on the result of 'json->scm'. * tests/import-utils.scm ("alist->package with dependencies"): New test. * gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3. * gnu/installer.scm (installer-program)[installer-builder]: Likewise. * gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref' instead of 'hash-ref', and pass vectors through 'vector->list'. (iso3166->iso3166-territories): Likewise. * gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3. * guix/docker.scm (manifest, config): Adjust for Guile-JSON 3. * guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3. * guix/import/github.scm (fetch-releases-or-tags): Update docstring. (latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass the result of 'fetch-releases-or-tags' to 'vector->list'. * guix/import/launchpad.scm (latest-released-version): Likewise. Ludovic Courtès 2019-05-06Add (guix lzlib)....* guix/lzlib.scm, tests/lzlib.scm: New files. * Makefile.am (MODULES): Add guix/lzlib.scm. (SCM_TESTS): Add tests/lzlib.scm. * m4/guix.m4 (GUIX_LIBLZ_LIBDIR): New macro. * configure.ac (LIBLZ_LIBDIR): Use it. Define and substitute 'LIBLZ'. * guix/config.scm.in (%liblz): New variable. * guix/self.scm (make-config.scm): Add TODO comment. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Pierre Neidhardt