diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:50:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:50:08 +0200 |
| commit | e4ca1bcea53127f4daa358691e46934e70fb908b (patch) | |
| tree | d83c4226d9378b6b34312c98123ff807f7278000 /gnu/packages/bioinformatics.scm | |
| parent | 662e2e82b1b32b98077ffbf35cf2a6985a2c75e3 (diff) | |
| download | guix-e4ca1bcea53127f4daa358691e46934e70fb908b.tar.gz guix-e4ca1bcea53127f4daa358691e46934e70fb908b.zip | |
gnu: jamm: Use G-expression.
* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 77 |
1 files changed, 38 insertions, 39 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0bdec29807..70134b34e2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15862,46 +15862,45 @@ Barcoding Kit or Rapid Barcoding Kit.") "0bsa5mf9n9q5jz7mmacrra41l7r8rac5vgsn6wv1fb52ya58b970")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; there are none - #:phases - (modify-phases %standard-phases - (delete 'configure) - (delete 'build) - (replace 'install - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (libexec (string-append out "/libexec/jamm")) - (bin (string-append out "/bin"))) - (substitute* '("JAMM.sh" - "SignalGenerator.sh") - (("^sPath=.*") - (string-append "sPath=\"" libexec "\"\n"))) - (for-each (lambda (file) - (install-file file libexec)) - (list "bincalculator.r" - "peakfinder.r" - "peakhelper.r" - "signalmaker.r" - "xcorr.r" - "xcorrhelper.r" - ;; Perl scripts - "peakfilter.pl" - "readshifter.pl")) + (list + #:tests? #f ;there are none + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (delete 'build) + (replace 'install + (lambda _ + (let ((libexec (string-append #$output "/libexec/jamm")) + (bin (string-append #$output "/bin"))) + (substitute* '("JAMM.sh" + "SignalGenerator.sh") + (("^sPath=.*") + (string-append "sPath=\"" libexec "\"\n"))) + (for-each (lambda (file) + (install-file file libexec)) + (list "bincalculator.r" + "peakfinder.r" + "peakhelper.r" + "signalmaker.r" + "xcorr.r" + "xcorrhelper.r" + ;; Perl scripts + "peakfilter.pl" + "readshifter.pl")) - (for-each - (lambda (script) - (chmod script #o555) - (install-file script bin) - (wrap-program (string-append bin "/" script) - `("PATH" ":" prefix - (,(string-append (assoc-ref inputs "coreutils") "/bin") - ,(string-append (assoc-ref inputs "gawk") "/bin") - ,(string-append (assoc-ref inputs "perl") "/bin") - ,(string-append (assoc-ref inputs "r-minimal") "/bin"))) - `("PERL5LIB" ":" prefix (,(getenv "PERL5LIB"))) - `("R_LIBS_SITE" ":" prefix (,(getenv "R_LIBS_SITE"))))) - (list "JAMM.sh" "SignalGenerator.sh"))) - #t))))) + (for-each + (lambda (script) + (chmod script #o555) + (install-file script bin) + (wrap-program (string-append bin "/" script) + `("PATH" ":" prefix + (,(string-append #$(this-package-input "coreutils") "/bin") + ,(string-append #$(this-package-input "gawk") "/bin") + ,(string-append #$(this-package-input "perl") "/bin") + ,(string-append #$(this-package-input "r-minimal") "/bin"))) + `("PERL5LIB" ":" prefix (,(getenv "PERL5LIB"))) + `("R_LIBS_SITE" ":" prefix (,(getenv "R_LIBS_SITE"))))) + (list "JAMM.sh" "SignalGenerator.sh")))))))) (inputs (list bash coreutils |