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| author | Efraim Flashner <efraim@flashner.co.il> | 2021-05-26 13:42:26 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2021-05-26 15:22:10 +0300 |
| commit | c5f7203e3eea9453c773f7e38c4adc50f09b024c (patch) | |
| tree | bf8ab2a34d7c5aeee436c145381ccdb710946e47 /gnu/packages/bioinformatics.scm | |
| parent | 36a90d0637bb47b113ceda5abb64c50600837436 (diff) | |
| download | guix-c5f7203e3eea9453c773f7e38c4adc50f09b024c.tar.gz guix-c5f7203e3eea9453c773f7e38c4adc50f09b024c.zip | |
gnu: minimap2: Install more files.
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Add modules.
Adjust custom 'install phase to also install library, headers and a
pkg-config file.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 25 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 46092fd589..af1010f853 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12336,6 +12336,9 @@ version does count multisplits.") (build-system gnu-build-system) (arguments `(#:tests? #f ; there are none + #:modules ((guix build utils) + (guix build gnu-build-system) + (srfi srfi-26)) #:make-flags (list (string-append "CC=" ,(cc-for-target)) (let ((system ,(or (%current-target-system) @@ -12358,10 +12361,30 @@ version does count multisplits.") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + (inc (string-append out "/include")) (man (string-append out "/share/man/man1"))) (install-file "minimap2" bin) - (mkdir-p man) - (install-file "minimap2.1" man)) + (install-file "libminimap2.a" lib) + (install-file "minimap2.1" man) + (map (cut install-file <> inc) + (find-files "." "\\.h$")) + ;; Not this file. + (delete-file (string-append inc "/emmintrin.h")) + (mkdir-p (string-append lib "/pkgconfig")) + (with-output-to-file (string-append lib "/pkgconfig/minimap2.pc") + (lambda _ + (format #t "prefix=~a~@ + exec_prefix=${prefix}~@ + libdir=${exec_prefix}/lib~@ + includedir=${prefix}/include~@ + ~@ + Name: libminimap2~@ + Version: ~a~@ + Description: A versatile pairwise aligner for genomic and spliced nucleotide sequence~@ + Libs: -L${libdir} -lminimap2~@ + Cflags: -I${includedir}~%" + out ,version)))) #t))))) (inputs `(("zlib" ,zlib))) |