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author | Ricardo Wurmus <rekado@elephly.net> | 2022-08-16 15:06:53 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2022-08-16 15:22:07 +0200 |
commit | 9c2400c28272b7354608f0c727e1f483db190719 (patch) | |
tree | 746a7f61473fbdacc56d74f187f213b0822c984f /gnu/packages/bioinformatics.scm | |
parent | a60412019e532dcdf1c74d17ac614ef9e074a5ce (diff) | |
download | guix-9c2400c28272b7354608f0c727e1f483db190719.tar.gz guix-9c2400c28272b7354608f0c727e1f483db190719.zip |
gnu: Add python-taggd.
* gnu/packages/bioinformatics.scm (python-taggd): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9c18737ade..518a904922 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6449,6 +6449,43 @@ Values such as sequence name, sequence description, sequence quality and the sequence itself can be retrieved from these databases.") (license license:bsd-3))) +(define-public python-taggd + (package + (name "python-taggd") + (version "0.3.6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/SpatialTranscriptomicsResearch/taggd") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0j19ah81z7aqrdljah9hyarp91gvgbk63pz6fz3pdpksy1yqyi6k")) + (modules '((guix build utils))) + (snippet + '(for-each delete-file + (find-files "taggd" "\\.c$"))))) + (build-system python-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'disable-broken-tests + (lambda _ + (substitute* "tests/taggd_demultiplex_test.py" + (("def test_normal_bam_run") + "def _disabled_test_normal_bam_run"))))))) + (propagated-inputs + (list python-numpy python-pysam python-setuptools)) + (native-inputs + (list python-cython)) + (home-page "https://github.com/SpatialTranscriptomicsResearch/taggd") + (synopsis "Genetic barcode demultiplexing") + (description "This package provides TagGD barcode demultiplexing utilities +for Spatial Transcriptomics data.") + (license license:bsd-3))) + (define-public sra-tools (package (name "sra-tools") |