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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-02 21:49:13 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-02 21:49:13 +0100 |
| commit | 8ed9ffedd4b7a01fe1ecb73e75931d2ccfcd4923 (patch) | |
| tree | 2127c6d8afea989c9f445a768017b97e45def92c /gnu/packages/bioinformatics.scm | |
| parent | ebd00a4e917461ba770be60637b2b041795b2f44 (diff) | |
| download | guix-8ed9ffedd4b7a01fe1ecb73e75931d2ccfcd4923.tar.gz guix-8ed9ffedd4b7a01fe1ecb73e75931d2ccfcd4923.zip | |
gnu: Add r-sleuth.
* gnu/packages/bioinformatics.scm (r-sleuth): New variable.
Change-Id: Ic358945548631fd3ac5de96b2efcf1fd93005898
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e03eb21531..bdad03b000 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10634,6 +10634,43 @@ analysis of cell types, subtypes, transcriptional gradients,cell-cycle variation, gene modules and their regulatory models and more.") (license license:expat)))) +(define-public r-sleuth + (package + (name "r-sleuth") + (version "0.30.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pachterlab/sleuth") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09xgc7r6iisjkk0c0wn0q56zy0aph386kphwixfzq4422y7vlqci")))) + (properties `((upstream-name . "sleuth"))) + (build-system r-build-system) + (propagated-inputs (list r-aggregation + r-data-table + r-dplyr + r-ggplot2 + r-lazyeval + r-matrixstats + r-pheatmap + r-reshape2 + r-rhdf5 + r-shiny + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/pachterlab/sleuth") + (synopsis "Tools for investigating RNA-Seq") + (description + "Sleuth is a program for differential analysis of RNA-Seq data. +It makes use of quantification uncertainty estimates obtained via Kallisto for +accurate differential analysis of isoforms or genes, allows testing in the +context of experiments with complex designs, and supports interactive +exploratory data analysis via sleuth live.") + (license license:gpl3))) + (define-public r-snapatac (package (name "r-snapatac") |