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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 14:53:03 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 16:31:54 +0100 |
| commit | 8cc22866c283f49c14f7b7419f57c40c8eee1f56 (patch) | |
| tree | 3cbecba416ddb2e72947c8f93fe4414a958cd45a /gnu/packages/bioinformatics.scm | |
| parent | 6d2afaf25b40bc055374cc1a1bf85efa1fb2e6fb (diff) | |
| download | guix-8cc22866c283f49c14f7b7419f57c40c8eee1f56.tar.gz guix-8cc22866c283f49c14f7b7419f57c40c8eee1f56.zip | |
gnu: bamtools: Update to 2.5.2.
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2.
[arguments]: Enable tests; remove extra phases.
[inputs]: Add jsoncpp.
[native-inputs]: Add pkg-config.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 4 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9dcc5bc92c..0f3d8010af 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -219,7 +219,7 @@ structure of the predicted RNA.") (define-public bamtools (package (name "bamtools") - (version "2.5.1") + (version "2.5.2") (source (origin (method git-fetch) (uri (git-reference @@ -228,21 +228,10 @@ structure of the predicted RNA.") (file-name (git-file-name name version)) (sha256 (base32 - "0nfb2ypcx9959xnbz6wxh6py3xfizgmg8nrknxl95c507m9hmq8b")))) + "14lw571vbks138i0lj66qjdbk8iwa817x2zbpzij61vv1gdgfbn5")))) (build-system cmake-build-system) - (arguments - `(#:tests? #f ;no "check" target - #:phases - (modify-phases %standard-phases - (add-before - 'configure 'set-ldflags - (lambda* (#:key outputs #:allow-other-keys) - (setenv "LDFLAGS" - (string-append - "-Wl,-rpath=" - (assoc-ref outputs "out") "/lib/bamtools")) - #t))))) - (inputs (list zlib)) + (inputs (list jsoncpp zlib)) + (native-inputs (list pkg-config)) (home-page "https://github.com/pezmaster31/bamtools") (synopsis "C++ API and command-line toolkit for working with BAM data") (description |