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authorzimoun <zimon.toutoune@gmail.com>2020-09-14 18:07:45 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-09-14 21:40:15 +0200
commit7df42d3774778dfbb92e935df720f6eb52965e66 (patch)
treef52337308478c2be96071ea8148bda3104254662 /gnu/packages/bioinformatics.scm
parent63b75c01c2374edc38437215278f50b617a12c08 (diff)
downloadguix-7df42d3774778dfbb92e935df720f6eb52965e66.tar.gz
guix-7df42d3774778dfbb92e935df720f6eb52965e66.zip
gnu: r-hitc: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-hitc): Move from here... * gnu/packages/bioconductor.scm (r-hitc): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 0 insertions, 29 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d874fe9a13..6bbcc3fe00 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10625,35 +10625,6 @@ intra-chromosomal contact maps produced by genome-wide genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
-(define-public r-hitc
- (package
- (name "r-hitc")
- (version "1.32.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "HiTC" version))
- (sha256
- (base32
- "1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"))))
- (properties `((upstream-name . "HiTC")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-matrix" ,r-matrix)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-rtracklayer" ,r-rtracklayer)))
- (home-page "https://bioconductor.org/packages/HiTC")
- (synopsis "High throughput chromosome conformation capture analysis")
- (description
- "The HiTC package was developed to explore high-throughput \"C\" data
-such as 5C or Hi-C. Dedicated R classes as well as standard methods for
-quality controls, normalization, visualization, and further analysis are also
-provided.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))