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| author | Christopher Baines <mail@cbaines.net> | 2023-06-18 12:17:53 +0100 |
|---|---|---|
| committer | Christopher Baines <mail@cbaines.net> | 2023-06-20 22:04:51 +0100 |
| commit | 7b535eb29b9d52221f65bd3ca9d9ae53baad0cac (patch) | |
| tree | 4b1218afcc46fc667e47c1eb0716945af2e1722b /gnu/packages/bioinformatics.scm | |
| parent | 6bafbfd40ff9d1066ec4041b37f90cd34de5a099 (diff) | |
| download | guix-7b535eb29b9d52221f65bd3ca9d9ae53baad0cac.tar.gz guix-7b535eb29b9d52221f65bd3ca9d9ae53baad0cac.zip | |
gnu: bioruby: Update to 2.0.4.
* gnu/packages/bioinformatics.scm (bioruby): Update to 2.0.4.
[arguments]: Update style.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 16 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9e356cba5d..4edcc28d12 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10876,34 +10876,34 @@ generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.") (define-public bioruby (package (name "bioruby") - (version "1.5.2") + (version "2.0.4") (source (origin (method url-fetch) (uri (rubygems-uri "bio" version)) (sha256 (base32 - "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938")))) + "08aknxk2ingwscwfqpw5vnax6jpk1sxfaialravladb63hcl8dx9")))) (build-system ruby-build-system) (propagated-inputs (list ruby-libxml)) (native-inputs (list which)) ; required for test phase (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'build 'patch-test-command - (lambda _ - (substitute* '("test/functional/bio/test_command.rb") - (("/bin/sh") (which "sh"))) - (substitute* '("test/functional/bio/test_command.rb") - (("/bin/ls") (which "ls"))) - (substitute* '("test/functional/bio/test_command.rb") - (("which") (which "which"))) - (substitute* '("test/functional/bio/test_command.rb", - "test/data/command/echoarg2.sh") - (("/bin/echo") (which "echo"))) - #t))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'patch-test-command + (lambda _ + (substitute* '("test/functional/bio/test_command.rb") + (("/bin/sh") (which "sh"))) + (substitute* '("test/functional/bio/test_command.rb") + (("/bin/ls") (which "ls"))) + (substitute* '("test/functional/bio/test_command.rb") + (("which") (which "which"))) + (substitute* '("test/functional/bio/test_command.rb" + "test/data/command/echoarg2.sh") + (("/bin/echo") (which "echo")))))))) (synopsis "Ruby library, shell and utilities for bioinformatics") (description "BioRuby comes with a comprehensive set of Ruby development tools and libraries for bioinformatics and molecular biology. BioRuby has |