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author | Ricardo Wurmus <rekado@elephly.net> | 2023-03-30 13:02:12 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-30 13:03:30 +0200 |
commit | 3f1617da195cff4c305cbede102b0e47dfc33d79 (patch) | |
tree | 56e6c64dc4df0b8cd5b5c07965ca447c457bea72 /gnu/packages/bioinformatics.scm | |
parent | 3d74f1676bdc7a0e1d2cf40c9700168572147da6 (diff) | |
download | guix-3f1617da195cff4c305cbede102b0e47dfc33d79.tar.gz guix-3f1617da195cff4c305cbede102b0e47dfc33d79.zip |
gnu: Add r-cytoexplorer.
* gnu/packages/bioinformatics.scm (r-cytoexplorer): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 79 |
1 files changed, 79 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fda01e00ca..6e7125b8ba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13991,6 +13991,85 @@ cells with similar identification cards in the different cytometric profiles is then merged.") (license license:gpl2)))) +(define-public r-cytoexplorer + (let ((commit "0efb1cc19fc701ae03905cf1b8484c1dfeb387df") + (revision "1")) + (package + (name "r-cytoexplorer") + (version (git-version "1.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/DillonHammill/CytoExploreR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1y7dadsy15i47rjmdq6ns80jzm6p0zmixll37q68ba2c7xn5pq3v")) + (snippet + '(delete-file + "docs/articles/CytoExploreR_files/vis-4.20.1/vis.min.js")))) + (properties `((upstream-name . "CytoExploreR"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "docs/articles/CytoExploreR_files/" + (let ((source (search-input-file inputs "/dist/vis.js")) + (target "vis-4.20.1/vis.min.js")) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target))))))))) + (propagated-inputs + (list r-biocgenerics + r-bslib + r-data-table + r-dplyr + r-embedsom + r-flowai + r-flowcore + r-flowworkspace + r-gtools + r-magrittr + r-mass + r-opencyto + r-purrr + r-rhandsontable + r-robustbase + r-rsvd + r-rtsne + r-shiny + r-superheat + r-tibble + r-tidyr + r-umap + r-visnetwork)) + (native-inputs + `(("esbuild" ,esbuild) + ("r-knitr" ,r-knitr) + ("js-vis" + ,(let ((version "4.20.1")) + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/almende/vis") + (commit (string-append "v" version)))) + (file-name (git-file-name "js-vis" version)) + (sha256 + (base32 + "09ldcqzzki5c0jlwas5992qjffqxnx6j5sl703qccfw7rg1hn469"))))))) + (home-page "https://github.com/DillonHammill/CytoExploreR") + (synopsis "Interactive analysis of cytometry data") + (description + "This package has been developed under ROpenSci gudelines to integrate +conventional and cutting edge cytometry analysis tools under a unified +framework. It aims to represent an intuitive and interactive approach to +analysing cytometry data in R.") + (license license:gpl2)))) + (define-public r-giotto (let ((commit "3c8067cedbf6e3112edcac2ae796de05fd9d6fe4") (revision "1")) |