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| author | Roel Janssen <roel@gnu.org> | 2020-09-09 16:56:02 +0200 |
|---|---|---|
| committer | Roel Janssen <roel@gnu.org> | 2020-09-09 16:56:02 +0200 |
| commit | 1f56ec08af704bdc7aa3e143bf5ce351c5306dea (patch) | |
| tree | 4bd33d11456c93e41220b776c45fe1223009c69f /gnu/packages/bioinformatics.scm | |
| parent | 37d337300885d40c21507fe19c2548c62a97779d (diff) | |
| download | guix-1f56ec08af704bdc7aa3e143bf5ce351c5306dea.tar.gz guix-1f56ec08af704bdc7aa3e143bf5ce351c5306dea.zip | |
gnu: Add r-loomr.
* gnu/packages/bioinformatics.scm (r-loomr): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cab3df222c..f8792ef4d4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7808,6 +7808,32 @@ and the assessment of differential expression. The analysis methods apply to different technologies, including microarrays, RNA-seq, and quantitative PCR.") (license license:gpl2+))) +(define-public r-loomr + (package + (name "r-loomr") + (version "0.2.0-beta") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/mojaveazure/loomR/archive/" + version ".tar.gz")) + (sha256 + (base32 + "1grchjgiky5siifkl9hmj6v0sf7q2by62rfdj2k8s2zhmrpgb0yw")))) + (build-system r-build-system) + (propagated-inputs + `(("r-hdf5r" ,r-hdf5r) + ("r-r6" ,r-r6) + ("r-iterators" ,r-iterators) + ("r-itertools" ,r-itertools) + ("r-matrix" ,r-matrix))) + (home-page "http://loompy.org") + (synopsis "R interface for loom files") + (description "This package provides an interface for the single-cell +RNAseq-oriented loom format. Loom files are an HDF5-based format for storing +and interacting with large single-cell RNAseq datasets.") + (license license:gpl3))) + (define-public r-xvector (package (name "r-xvector") |