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| author | Nicolas Goaziou <mail@nicolasgoaziou.fr> | 2023-06-29 00:37:38 +0200 |
|---|---|---|
| committer | Nicolas Goaziou <mail@nicolasgoaziou.fr> | 2023-07-18 18:16:42 +0200 |
| commit | 1e92db8927864f2d9e3dc8a5127c45fa743e7e12 (patch) | |
| tree | 13744ab7e335b04072d2cc310aca8984bf37c4ca /gnu/packages/bioinformatics.scm | |
| parent | 42500f1aad885b873a1b0e78cdedc0a75b641be6 (diff) | |
| download | guix-1e92db8927864f2d9e3dc8a5127c45fa743e7e12.tar.gz guix-1e92db8927864f2d9e3dc8a5127c45fa743e7e12.zip | |
gnu: velvet: Improve package style.
* gnu/packages/bioinformatics.scm (velvet)[arguments]: Use G-expressions.
[native-inputs]: Remove label.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 56 |
1 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 81244f0daa..d4bc5ac047 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17066,37 +17066,37 @@ to an artifact/contaminant file.") (delete-file-recursively "third-party"))))) (build-system gnu-build-system) (arguments - `(#:make-flags '("OPENMP=t") - #:test-target "test" - #:phases - (modify-phases %standard-phases - (delete 'configure) - (add-after 'unpack 'fix-zlib-include - (lambda _ - (substitute* "src/binarySequences.c" - (("../third-party/zlib-1.2.3/zlib.h") "zlib.h")))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (doc (string-append out "/share/doc/velvet"))) - (mkdir-p bin) - (mkdir-p doc) - (install-file "velveth" bin) - (install-file "velvetg" bin) - (install-file "Manual.pdf" doc) - (install-file "Columbus_manual.pdf" doc))))))) + (list + #:make-flags #~(list "OPENMP=t") + #:test-target "test" + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'fix-zlib-include + (lambda _ + (substitute* "src/binarySequences.c" + (("../third-party/zlib-1.2.3/zlib.h") "zlib.h")))) + (replace 'install + (lambda _ + (let ((bin (string-append #$output "/bin")) + (doc (string-append #$output "/share/doc/velvet"))) + (mkdir-p bin) + (mkdir-p doc) + (install-file "velveth" bin) + (install-file "velvetg" bin) + (install-file "Manual.pdf" doc) + (install-file "Columbus_manual.pdf" doc))))))) (inputs (list openmpi zlib)) (native-inputs - `(("texlive" ,(texlive-updmap.cfg - (list texlive-ec - texlive-graphics - texlive-grfext - texlive-hyperref - texlive-infwarerr - texlive-kvoptions - texlive-pdftexcmds))))) + (list (texlive-updmap.cfg + (list texlive-ec + texlive-graphics + texlive-grfext + texlive-hyperref + texlive-infwarerr + texlive-kvoptions + texlive-pdftexcmds)))) (home-page "https://www.ebi.ac.uk/~zerbino/velvet/") (synopsis "Nucleic acid sequence assembler for very short reads") (description |