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| author | Efraim Flashner <efraim@flashner.co.il> | 2021-11-08 09:06:14 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2021-11-08 09:06:14 +0200 |
| commit | 1c94392a13cbdf87e03a644633eb775bf45694a1 (patch) | |
| tree | 74f11038dfc5f9d9db06660b1087253b28c5434f /gnu/packages/bioinformatics.scm | |
| parent | dd87bbb2b78b279248aaff15c0706fcd6d8cd7bb (diff) | |
| parent | 9d25ee30b188f9202cc14f7cd25ba8a1c3ec1a72 (diff) | |
| download | guix-1c94392a13cbdf87e03a644633eb775bf45694a1.tar.gz guix-1c94392a13cbdf87e03a644633eb775bf45694a1.zip | |
Merge remote-tracking branch 'origin/master' into core-updates-frozen
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 14 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3ddb91714a..12533c9efa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -528,14 +528,26 @@ BED, GFF/GTF, VCF.") '(#:test-target "test" #:phases (modify-phases %standard-phases + (add-after 'unpack 'compatibility + (lambda _ + (substitute* "src/utils/fileType/FileRecordTypeChecker.h" + (("static const float PERCENTAGE") + "static constexpr float PERCENTAGE")) + (substitute* "src/utils/general/DualQueue.h" + (("template <class T, template<class T> class CompareFunc>") + "template <class T, template<class U> class CompareFunc>")))) (delete 'configure) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) (for-each (lambda (file) (install-file file bin)) - (find-files "bin" ".*"))) - #t))))))) + (find-files "bin" ".*")))))))) + (native-inputs + `(("python" ,python-wrapper))) + (inputs + `(("samtools" ,samtools) + ("zlib" ,zlib))))) (define-public pbbam (package |