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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-11-29 21:56:24 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 16:59:59 +0100 |
| commit | eb04b8ca591db81586b779a20932f7e45fdd44c0 (patch) | |
| tree | 9dc5175ed818d53e0a2e2e3c6d8a726cd013173a /gnu/packages/bioconductor.scm | |
| parent | 0e1b5c7d44fba4ab183b612386f2a3345025d6f9 (diff) | |
| download | guix-eb04b8ca591db81586b779a20932f7e45fdd44c0.tar.gz guix-eb04b8ca591db81586b779a20932f7e45fdd44c0.zip | |
gnu: r-affyplm: Add missing inputs and disable tests.
* gnu/packages/bioconductor.scm (r-affyplm)[native-inputs]: Add r-affydata and
r-hgu95av2cdf.
[arguments]: Disable tests.
[properties]: Tell updater to keep extra input.
Change-Id: I05778ba527078d46e955a752a2b1af075508fdf0
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 83590d26b3..40d3b2853e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3822,8 +3822,12 @@ limma packages.") (uri (bioconductor-uri "affyPLM" version)) (sha256 (base32 "182zym9g8rzyrmj78yzpdh44av616x6228xzxwa45wz2spg9bj47")))) - (properties `((upstream-name . "affyPLM"))) + (properties + `((upstream-name . "affyPLM") + (updater-extra-native-inputs . ("r-hgu95av2cdf")))) (build-system r-build-system) + ;; Tests fail with: return code from pthread_create() is 22 + (arguments (list #:tests? #false)) (inputs (list zlib)) (propagated-inputs (list r-affy @@ -3832,6 +3836,7 @@ limma packages.") r-gcrma r-preprocesscore r-zlibbioc)) + (native-inputs (list r-affydata r-hgu95av2cdf)) (home-page "https://github.com/bmbolstad/affyPLM") (synopsis "Methods for fitting probe-level models") (description |