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authorRicardo Wurmus <rekado@elephly.net>2023-07-19 14:54:02 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-07-19 14:54:02 +0200
commitd0c96a78edf32409ef39cec6986c131c280f9ec5 (patch)
tree5f32661b3771e0b9eeafd7ce78b3386c36098b76 /gnu/packages/bioconductor.scm
parent46cae56dfe63ca72b5aaf38c28275b6109d9a572 (diff)
downloadguix-d0c96a78edf32409ef39cec6986c131c280f9ec5.tar.gz
guix-d0c96a78edf32409ef39cec6986c131c280f9ec5.zip
gnu: Add r-genomicdatacommons.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f6917405a3..7b633f4bad 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6996,6 +6996,37 @@ junction detection, and working with the nucleotide content of the
alignments.")
(license license:artistic2.0)))
+(define-public r-genomicdatacommons
+ (package
+ (name "r-genomicdatacommons")
+ (version "1.24.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicDataCommons" version))
+ (sha256
+ (base32
+ "0dgvhi6nbc1qvrdwww2r39gxd2xmbadvy03lxh5nny9pyhhdlz3l"))))
+ (properties `((upstream-name . "GenomicDataCommons")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-dplyr
+ r-genomicranges
+ r-httr
+ r-iranges
+ r-jsonlite
+ r-magrittr
+ r-rappdirs
+ r-readr
+ r-rlang
+ r-tibble
+ r-xml2))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/GenomicDataCommons")
+ (synopsis "NIH/NCI genomic data commons access")
+ (description
+ "This package lets you programmatically access the NIH/NCI Genomic Data
+Commons RESTful service.")
+ (license license:artistic2.0)))
+
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")