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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-12-01 08:33:49 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 17:00:00 +0100 |
| commit | 9e72ac0e0c288192443f494ccc82fac984a6dd2f (patch) | |
| tree | ffac1b44cf04c9256ddd8b23b16edcbd0f295bbd /gnu/packages/bioconductor.scm | |
| parent | 68c1fab64fb778f78b9223dd80c7d9eb712377aa (diff) | |
| download | guix-9e72ac0e0c288192443f494ccc82fac984a6dd2f.tar.gz guix-9e72ac0e0c288192443f494ccc82fac984a6dd2f.zip | |
gnu: r-xcms: Disable tests.
* gnu/packages/bioconductor.scm (r-xcms)[arguments]: Disable tests.
[properties]: Tell updater to ignore r-faahko.
[native-inputs]: Add r-msdata.
Change-Id: I2ee167828534a4046d15d740f6f25d8eff9d589f
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 8 |
1 files changed, 7 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e4426c3a68..dc5b08aec4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -19365,7 +19365,13 @@ based on @dfn{Continuous Wavelet Transform} (CWT).") (sha256 (base32 "1i9xiilrwvnzkdbzrdnbsw0sbwplfaklbsk3wz8kzv87ivipybh5")))) + (properties + '((upstream-name . "xcms") + ;; Avoid dependency cycle. + (updater-ignored-native-inputs . ("r-faahko")))) (build-system r-build-system) + ;; Tests require faahKO, which depends on this package. + (arguments (list #:tests? #false)) (propagated-inputs (list r-biobase r-biocgenerics @@ -19386,7 +19392,7 @@ based on @dfn{Continuous Wavelet Transform} (CWT).") r-spectra r-summarizedexperiment)) (native-inputs - (list r-knitr r-testthat)) + (list r-knitr r-msdata r-testthat)) (home-page "https://bioconductor.org/packages/xcms/") (synopsis "LC/MS and GC/MS mass spectrometry data analysis") (description |