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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-11-28 12:56:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 16:59:57 +0100 |
| commit | 8dcf48ab941c8e9fb9a31d460133dd5acc4e54e6 (patch) | |
| tree | 0a193200b944f33543def8d2710469c779da596d /gnu/packages/bioconductor.scm | |
| parent | 587ec117f4c18121b651195f51b777d80d01c1f5 (diff) | |
| download | guix-8dcf48ab941c8e9fb9a31d460133dd5acc4e54e6.tar.gz guix-8dcf48ab941c8e9fb9a31d460133dd5acc4e54e6.zip | |
gnu: r-mosdef: Add missing inputs.
* gnu/packages/bioconductor.scm (r-mosdef)[native-inputs]: Add r-macrophage
and r-org-hs-eg-db.
[properties]: Tell updater to ignore r-pcaexplorer.
Change-Id: I27258d7119cbe5de244c2db6d91ec8c5b0bd0975
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bc71c7005f..6f1c02ede5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10515,7 +10515,10 @@ location information (and the reverse operation) is implemented as well.") (uri (bioconductor-uri "mosdef" version)) (sha256 (base32 "0y2hniyb1y5hxlsm339059kb4n3l21fzb3xx112igsbk7zd0r258")))) - (properties `((upstream-name . "mosdef"))) + (properties + `((upstream-name . "mosdef") + ;; Avoid dependency cycle. + (updater-ignored-native-inputs . ("r-pcaexplorer")))) (build-system r-build-system) (propagated-inputs (list r-annotationdbi r-clusterprofiler @@ -10533,7 +10536,7 @@ location information (and the reverse operation) is implemented as well.") r-scales r-summarizedexperiment r-topgo)) - (native-inputs (list r-knitr r-testthat)) + (native-inputs (list r-knitr r-macrophage r-org-hs-eg-db r-testthat)) (home-page "https://github.com/imbeimainz/mosdef") (synopsis "Frequently used and useful differential expression functions") (description |