diff options
author | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 15:17:58 +0200 |
---|---|---|
committer | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 15:29:22 +0200 |
commit | 5be6946e19433edb08f99adab7d288ab6f88978a (patch) | |
tree | 0f73a5518e990113d12b6d1c83329a5909207614 /gnu/packages/bioconductor.scm | |
parent | a4dc8edcedb98fa37224b287e24260ac4946a86d (diff) | |
download | guix-5be6946e19433edb08f99adab7d288ab6f88978a.tar.gz guix-5be6946e19433edb08f99adab7d288ab6f88978a.zip |
gnu: Add r-beadarray.
* gnu/packages/bioconductor.scm (r-beadarray): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d8ce480486..14f8e54c1f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -19263,6 +19263,39 @@ variety of commonly used matrix types, including sparse and HDF5-backed matrices.") (license license:gpl3))) +(define-public r-beadarray + (package + (name "r-beadarray") + (version "2.50.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "beadarray" version)) + (sha256 + (base32 + "0rd41193rq6v4a97ibp0l2bz140nsv91plhn7iim8d8n9hgxqhjp")))) + (properties `((upstream-name . "beadarray"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-beaddatapackr + r-biobase + r-biocgenerics + r-genomicranges + r-ggplot2 + r-hexbin + r-illuminaio + r-iranges + r-limma + r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/beadarray") + (synopsis + "Quality assessment and low-level analysis for Illumina BeadArray data") + (description + "The package is able to read bead-level data (raw TIFFs and text files) +output by BeadScan as well as bead-summary data from BeadStudio. Methods for +quality assessment and low-level analysis are provided.") + (license license:expat))) + (define-public r-beadarraysnp (package (name "r-beadarraysnp") |