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authorRicardo Wurmus <rekado@elephly.net>2023-07-19 15:17:58 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-07-19 15:29:22 +0200
commit5be6946e19433edb08f99adab7d288ab6f88978a (patch)
tree0f73a5518e990113d12b6d1c83329a5909207614 /gnu/packages/bioconductor.scm
parenta4dc8edcedb98fa37224b287e24260ac4946a86d (diff)
downloadguix-5be6946e19433edb08f99adab7d288ab6f88978a.tar.gz
guix-5be6946e19433edb08f99adab7d288ab6f88978a.zip
gnu: Add r-beadarray.
* gnu/packages/bioconductor.scm (r-beadarray): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d8ce480486..14f8e54c1f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -19263,6 +19263,39 @@ variety of commonly used matrix types, including sparse and HDF5-backed
matrices.")
(license license:gpl3)))
+(define-public r-beadarray
+ (package
+ (name "r-beadarray")
+ (version "2.50.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "beadarray" version))
+ (sha256
+ (base32
+ "0rd41193rq6v4a97ibp0l2bz140nsv91plhn7iim8d8n9hgxqhjp"))))
+ (properties `((upstream-name . "beadarray")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationdbi
+ r-beaddatapackr
+ r-biobase
+ r-biocgenerics
+ r-genomicranges
+ r-ggplot2
+ r-hexbin
+ r-illuminaio
+ r-iranges
+ r-limma
+ r-reshape2))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/beadarray")
+ (synopsis
+ "Quality assessment and low-level analysis for Illumina BeadArray data")
+ (description
+ "The package is able to read bead-level data (raw TIFFs and text files)
+output by BeadScan as well as bead-summary data from BeadStudio. Methods for
+quality assessment and low-level analysis are provided.")
+ (license license:expat)))
+
(define-public r-beadarraysnp
(package
(name "r-beadarraysnp")