gnu: python-shapely: Update to 1.8.2. - guix

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author	Guillaume Le Vaillant <glv@posteo.net>	2022-08-04 11:38:43 +0200
committer	Guillaume Le Vaillant <glv@posteo.net>	2022-08-04 11:38:43 +0200
commit	933d3cf7f7fe7ed6eae130ae8275176573af1638 (patch)
tree	053385b3aa470b4f3f40278a0bd82a1d383a4af9 /gnu/machine/ssh.scm
parent	d921cf8d279daa67406445aed5828564f059600c (diff)
download	guix-933d3cf7f7fe7ed6eae130ae8275176573af1638.tar.gz guix-933d3cf7f7fe7ed6eae130ae8275176573af1638.zip

gnu: python-shapely: Update to 1.8.2.

* gnu/packages/python-xyz.scm (python-shapely): Update to 1.8.2. [source]: Remove snippet.

Diffstat (limited to 'gnu/machine/ssh.scm')

0 files changed, 0 insertions, 0 deletions

sg'> * nix/libstore/build.cc (DerivationGoal::registerOutput): ‘’ → `'. 2022-05-29daemon: Clarify ‘--check’ error when outputs are missing.Tobias Geerinckx-Rice Drop the confusing ‘invalid’ jargon and display a hint like we do for ‘--fallback’. * nix/libstore/build.cc (DerivationGoal::outputsSubstituted): Rewrite error message. 2022-05-18daemon: runChild() is forbidden to talk during environment set upyarl-baudig@mailoo.org DerivationGoal::startBuilder() is waiting for an empty line as a check that the environment set up is fine. Fixes <https://issues.guix.gnu.org/55324>. * nix/libstore/build.cc (DerivationGoal::runChild): Remove 'debug' statement corresponding to bind mounts. Signed-off-by: Ludovic Courtès <ludo@gnu.org> 2022-01-18daemon: Always default to gzip for log compression.Ludovic Courtès * nix/libstore/globals.cc (Settings::Settings): Have 'logCompression' default to COMPRESSION_GZIP unconditionally. * gnu/services/base.scm (<guix-configuration>)[log-compression]: Default to 'gzip. * doc/guix.texi (Invoking guix-daemon, Base Services): Adjust accordingly. 2021-11-27daemon: Print the line whence we expect an integer.Tobias Geerinckx-Rice * nix/libstore/local-store.cc (LocalStore::getLineFromSubstituter): Include the malformed substituter stream line in the error message. 2021-11-25daemon: Read substitute nar size as 'unsigned long long'.Ludovic Courtès Fixes <https://issues.guix.gnu.org/46212>. Reported by Christopher Baines <mail@cbaines.net>. Previously, the nar size returned by 'guix substitute' would be read as an 'int'; thus, values above 2^31 - 1 would be read and then stored as negative integers in the database. Regression introduced in 9dfa20a22ae0be3d3b01a7b3d422af97428c627e. * nix/libstore/build.cc (SubstitutionGoal::finished): Use templatized 'string2Int' instead of 'std::atoi' to get an 'unsigned long long', which is the type of 'hash.second'. * tests/store.scm ("substitute and large size"): New test. 2021-11-25daemon: Read unsigned nar size and download size from substituter.Ludovic Courtès Fixes <https://issues.guix.gnu.org/51983>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * nix/libstore/local-store.cc (LocalStore::querySubstitutablePathInfos): Expect 'unsigned long long' for 'downloadSize' and 'narSize'. * tests/store.scm ("substitute query and large size"): New test. 2021-11-16daemon: Do not deduplicate files smaller than 8 KiB.Ludovic Courtès Files smaller than 8 KiB typically represent ~70% of the entries in /gnu/store/.links but only contribute to ~4% of the space savings afforded by deduplication. Not considering these files for deduplication speeds up file insertion in the store and, more importantly, leaves 'removeUnusedLinks' with fewer entries to traverse, thereby speeding it up proportionally. Partly fixes <https://issues.guix.gnu.org/24937>. * config-daemon.ac: Remove symlink hard link check and CAN_LINK_SYMLINK definition. * guix/store/deduplication.scm (%deduplication-minimum-size): New variable. (deduplicate)[loop]: Do not recurse when FILE's size is below %DEDUPLICATION-MINIMUM-SIZE. (dump-port): New procedure. (dump-file/deduplicate)[hash]: Turn into... [dump-and-compute-hash]: ... this thunk. Call 'deduplicate' only when SIZE is greater than %DEDUPLICATION-MINIMUM-SIZE; otherwise call 'dump-port'. * nix/libstore/gc.cc (LocalStore::removeUnusedLinks): Drop files where st.st_size < deduplicationMinSize. * nix/libstore/local-store.hh (deduplicationMinSize): New declaration. * nix/libstore/optimise-store.cc (deduplicationMinSize): New variable. (LocalStore::optimisePath_): Return when PATH is a symlink or smaller than 'deduplicationMinSize'. * tests/derivations.scm ("identical files are deduplicated"): Produce files bigger than %DEDUPLICATION-MINIMUM-SIZE. * tests/nar.scm ("restore-file-set with directories (signed, valid)"): Likewise. * tests/store-deduplication.scm ("deduplicate, below %deduplication-minimum-size"): New test. ("deduplicate", "deduplicate, ENOSPC"): Produce files bigger than %DEDUPLICATION-MINIMUM-SIZE. * tests/store.scm ("substitute, deduplication"): Likewise. 2021-04-09daemon: 'guix substitute' replies on FD 4.Ludovic Courtès This avoids the situation where error messages would unintentionally go to stderr and be wrongfully interpreted as a reply by the daemon. Fixes <https://bugs.gnu.org/46362>. This is a followup to ee3226e9d54891c7e696912245e4904435be191c. * guix/scripts/substitute.scm (display-narinfo-data): Add 'port' parameter and honor it. (process-query): Likewise. (process-substitution): Likewise. (%error-to-file-descriptor-4?, with-redirected-error-port): Remove. (%reply-file-descriptor): New variable. (guix-substitute): Remove use of 'with-redirected-error-port'. Define 'reply-port' and pass it to 'process-query' and 'process-substitution'. * nix/libstore/build.cc (SubstitutionGoal::handleChildOutput): Swap 'builderOut' and 'fromAgent'. * nix/libstore/local-store.cc (LocalStore::getLineFromSubstituter): Likewise. * tests/substitute.scm <top level>: Set '%reply-file-descriptor' rather than '%error-to-file-descriptor-4?'. 2021-03-18daemon: Prevent privilege escalation with '--keep-failed' [security].Ludovic Courtès Fixes <https://bugs.gnu.org/47229>. Reported by Nathan Nye of WhiteBeam Security. * nix/libstore/build.cc (DerivationGoal::startBuilder): When 'useChroot' is true, add "/top" to 'tmpDir'. (DerivationGoal::deleteTmpDir): Adjust accordingly. When 'settings.keepFailed' is true, chown in two steps: first the "/top" sub-directory, and then rename "/top" to its parent. 2020-12-19daemon: Delegate deduplication to 'guix substitute'.Ludovic Courtès This removes the main source of latency between subsequent downloads. * nix/libstore/build.cc (SubstitutionGoal::tryToRun): Add a "deduplicate" key to ENV. (SubstitutionGoal::finished): Remove call to 'optimisePath'. * guix/scripts/substitute.scm (process-substitution)[destination-in-store?] [dump-file/deduplicate*]: New variables. Pass #:dump-file to 'restore-file'. * guix/scripts/substitute.scm (guix-substitute)[deduplicate?]: New variable. Pass #:deduplicate? to 'process-substitution'. * guix/serialization.scm (dump-file): Export and augment 'dump-file'. 2020-12-19daemon: Do not reset timestamps and permissions on substituted items.Ludovic Courtès 'guix substitute' now takes care of it via 'restore-file'. * nix/libstore/build.cc (SubstitutionGoal::finished): Remove call to 'canonicalisePathMetaData'. 2020-12-19daemon: Let 'guix substitute' perform hash checks.Ludovic Courtès This way, the hash of the store item can be computed as it is restored, thereby avoiding an additional file tree traversal ('hashPath' call) later on in the daemon. Consequently, it should reduce latency between subsequent substitute downloads. This is a followup to 5ff521452b9ec2aae9ed8e4bb7bdc250a581f203. * guix/scripts/substitute.scm (narinfo-hash-algorithm+value): New procedure. (process-substitution): Wrap INPUT into a hash input port, 'hashed', and read from it. Compare the actual and expected hashes, and print a "hash-mismatch" status line when they differ. When they match, print not just "success" but also the nar hash and size. * nix/libstore/build.cc (class SubstitutionGoal)[expectedHashStr]: Remove. (SubstitutionGoal::finished): Tokenize 'status'. Parse it and handle "success" and "hash-mismatch" accordingly. Call 'hashPath' only when the returned hash is not SHA256. (SubstitutionGoal::handleChildOutput): Remove 'expectedHashStr' handling. * tests/substitute.scm ("substitute, invalid hash"): Rename to... ("substitute, invalid narinfo hash"): ... this. ("substitute, invalid hash"): New test. 2020-12-08daemon: Raise an error if substituter doesn't send the expected hash.Ludovic Courtès It was already impossible in practice for 'expectedHashStr' to be empty if 'status' == "success". * nix/libstore/build.cc (SubstitutionGoal::finished): Throw 'SubstError' when 'expectedHashStr' is empty. 2020-12-08substitute: Cache and reuse connections while substituting.Ludovic Courtès That way, when fetching a series of substitutes from the same server(s), the connection is reused instead of being closed/opened for each substitutes, which saves on network round trips and TLS handshakes. * guix/http-client.scm (http-fetch): Add #:keep-alive? and honor it. * guix/progress.scm (progress-report-port): Add #:close? parameter and honor it. * guix/scripts/substitute.scm (at-most): Return the tail as a second value. (fetch): Add #:port and #:keep-alive? and honor them. (%max-cached-connections): New variable. (open-connection-for-uri/cached, call-with-cached-connection): New procedures. (with-cached-connection): New macro. (process-substitution): Wrap 'fetch' call in 'with-cached-connection'. Pass #:close? to 'progress-report-port'. 2020-12-08daemon: Run 'guix substitute --substitute' as an agent.Ludovic Courtès This avoids spawning one substitute process per substitution. * nix/libstore/build.cc (class Worker)[substituter]: New field. [outPipe, logPipe, pid]: Remove. (class SubstitutionGoal)[expectedHashStr, status, substituter]: New fields. (SubstitutionGoal::timedOut): Adjust to check 'substituter'. (SubstitutionGoal::tryToRun): Remove references to 'outPipe' and 'logPipe'. Run "guix substitute --substitute" as an 'Agent'. Send the request with 'writeLine'. (SubstitutionGoal::finished): Likewise. (SubstitutionGoal::handleChildOutput): Change to fill in 'expectedHashStr' and 'status'. (SubstitutionGoal::handleEOF): Call 'wakeUp' unconditionally. (SubstitutionGoal::~SubstitutionGoal): Adjust to check 'substituter'. * guix/scripts/substitute.scm (process-substitution): Write "success\n" to stdout upon success. (%error-to-file-descriptor-4?): New variable. (guix-substitute): Set 'current-error-port' to file descriptor 4 unless (%error-to-file-descriptor-4?) is false. Remove "--substitute" arguments. Loop reading line from stdin. * tests/substitute.scm <top level>: Call '%error-to-file-descriptor-4?'. (request-substitution): New procedure. ("substitute, no signature") ("substitute, invalid hash") ("substitute, unauthorized key") ("substitute, authorized key") ("substitute, unauthorized narinfo comes first") ("substitute, unsigned narinfo comes first") ("substitute, first narinfo is unsigned and has wrong hash") ("substitute, first narinfo is unsigned and has wrong refs") ("substitute, two invalid narinfos") ("substitute, narinfo with several URLs"): Adjust to new "guix substitute --substitute" calling convention. 2020-12-08daemon: Factorize substituter agent spawning.Ludovic Courtès * nix/libstore/local-store.hh (class LocalStore)[substituter]: New method. [runningSubstituter]: Turn into a shared_ptr. * nix/libstore/local-store.cc (LocalStore::querySubstitutablePaths): Call 'substituter' instead of using inline code. (LocalStore::querySubstitutablePathInfos): Likewise. (LocalStore::substituter): New method. 2020-12-08daemon: Use 'Agent' to spawn 'guix substitute --query'.Ludovic Courtès * nix/libstore/local-store.hh (RunningSubstituter): Remove. (LocalStore)[runningSubstituter]: Change to unique_ptr<Agent>. [setSubstituterEnv, didSetSubstituterEnv]: Remove. [getLineFromSubstituter, getIntLineFromSubstituter]: Take an 'Agent'. * nix/libstore/local-store.cc (LocalStore::~LocalStore): Remove reference to 'runningSubstituter'. (LocalStore::setSubstituterEnv, LocalStore::startSubstituter): Remove. (LocalStore::getLineFromSubstituter): Adjust to 'run' being an 'Agent'. (LocalStore::querySubstitutablePaths): Spawn substituter agent if needed. Adjust to 'Agent' interface. (LocalStore::querySubstitutablePathInfos): Likewise. * nix/libstore/build.cc (SubstitutionGoal::tryToRun): Remove call to 'setSubstituterEnv' and add 'setenv' call for "_NIX_OPTIONS" instead. (SubstitutionGoal::finished): Remove 'readLine' call for 'dummy'. * guix/scripts/substitute.scm (%allow-unauthenticated-substitutes?): Remove second argument to 'make-parameter'. (process-query): Call 'warn-about-missing-authentication' when (%allow-unauthenticated-substitutes?) is #t. (guix-substitute): Wrap body in 'parameterize'. Set 'guix-warning-port' too. No longer exit when 'substitute-urls' returns the empty list. No longer print newline initially. * tests/substitute.scm (test-quit): Parameterize 'current-error-port' to account for the port changes in 'guix-substitute'. 2020-12-01daemon: Remove unneeded forward declaration.Ludovic Courtès This is a followup to ee9dff34f9317509cb2b833d07a0d5e01a36a4ae. * nix/libstore/build.cc: Remove 'struct Agent' forward declaration. 2020-11-29daemon: Remove pre-Guix hack.Ludovic Courtès * nix/libstore/build.cc (DerivationGoal::startBuilder): Remove "NIX_OUTPUT_CHECKED" hack. 2020-10-09nix: Honor '--rounds' when also using '--check'.Maxim Cournoyer Fixes <https://issues.guix.gnu.org/40144>. Until now, the '--rounds' option, when also using '--check', was ignored. This change makes it possible to use both, so that an item that has already been built once can be rebuilt as many times as desired. * nix/libstore/build.cc: Remove the conditionals causing the daemon to complete a build task early when 'buildMode' is equal to 'nix::bmCheck'. Reported-by: Brice Waegeneire <brice@waegenei.re> 2020-10-01daemon: Try to execute derivation builders only for matching OS kernels.Ludovic Courtès Fixes <https://bugs.gnu.org/43668>. Previously, guix-daemon would try to run GNU/Hurd executables on GNU/Linux. execve(2) would succeed, but the executable would immediately crash. This change prevents it from attempting to execute "i586-gnu" code on "*-linux", while preserving the binfmt_misc-friendly behavior implemented in commit 7bf2a70a4ffd976d50638d3b9f2ec409763157df. * nix/libstore/build.cc (sameOperatingSystemKernel): New function. (DerivationGoal::runChild): Call 'execve' only when 'sameOperatingSystemKernel' returns true. 2020-09-14daemon: Spawn 'guix authenticate' once for all.Ludovic Courtès Previously, we'd spawn 'guix authenticate' once for each item that has to be signed (when exporting) or authenticated (when importing). Now, we spawn it once for all and then follow a request/reply protocol. This reduces the wall-clock time of: guix archive --export -r $(guix build coreutils -d) from 30s to 2s. * guix/scripts/authenticate.scm (sign-with-key): Return the signature instead of displaying it. Raise a &formatted-message instead of calling 'leave'. (validate-signature): Likewise. (read-command): New procedure. (define-enumerate-type, reply-code): New macros. (guix-authenticate)[send-reply]: New procedure. Change to read commands from current-input-port. * nix/libstore/local-store.cc (runAuthenticationProgram): Remove. (authenticationAgent, readInteger, readAuthenticateReply): New functions. (signHash, verifySignature): Rewrite in terms of the agent. * tests/store.scm ("import not signed"): Remove 'pk' call. ("import signed by unauthorized key"): Check the error message of C. * tests/guix-authenticate.sh: Rewrite using the new protocol. fixlet 2020-09-14daemon: Move 'Agent' to libutil.Ludovic Courtès * nix/libstore/build.cc (DerivationGoal::tryBuildHook): Add "offload" to 'args' and pass settings.guixProgram as the first argument to Agent::Agent. (pathNullDevice, commonChildInit, Agent, Agent::Agent) (Agent::~Agent): Move to... * nix/libutil/util.cc: ... here. * nix/libutil/util.hh (struct Agent, commonChildInit): New declarations. 2020-09-14daemon: Isolate signing and signature verification functions.Ludovic Courtès * nix/libstore/local-store.cc (signHash, verifySignature): New functions. (LocalStore::exportPath): Use 'signHash' instead of inline code. (LocalStore::importPath): Use 'verifySignature' instead of inline code. 2020-09-14daemon: Generalize 'HookInstance' to 'Agent'.Ludovic Courtès * nix/libstore/build.cc (HookInstance): Rename to... (Agent): ... this. Rename 'toHook' and 'fromHook' similarly and update users. Change constructor to require a command and an argument list. (DerivationGoal::tryBuildHook): Pass arguments to the 'Agent' constructor. 2020-09-11daemon: Simplify interface with 'guix authenticate'.Ludovic Courtès There's no reason at this point to mimic the calling convention of the 'openssl' command. * nix/libstore/local-store.cc (LocalStore::exportPath): Add only "sign" and HASH to ARGS. Remove 'tmpDir' and 'hashFile'. (LocalStore::importPath): Add only "verify" and SIGNATURE to * guix/scripts/authenticate.scm (guix-authenticate): Adjust accordingly; remove the OpenSSL-style clauses. (read-hash-data): Remove. (sign-with-key): Replace 'port' with 'sha256' and adjust accordingly. (validate-signature): Export SIGNATURE to be a canonical sexp. * tests/guix-authenticate.sh: Adjust tests accordingly.


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