gnu: krona-tools: Install download scripts.

* gnu/packages/web.scm (krona-tools)[inputs]: Add curl and make. [arguments]: Patch and install update scripts to /share.
author: Ricardo Wurmus <rekado@elephly.net> 2021-04-28 10:15:43 +0200
committer: Ricardo Wurmus <rekado@elephly.net> 2021-04-28 10:18:07 +0200
commit: ffd5bc9600db50d5ffa7347f1aee8ee106db732d (patch)
tree: 7b8972eb991cf30dab2f0509a636c431e396424e /doc
parent: fe28f395bc2271ecc1221d4ba30c237c2368d9dc (diff)
download: guix-ffd5bc9600db50d5ffa7347f1aee8ee106db732d.tar.gz
guix-ffd5bc9600db50d5ffa7347f1aee8ee106db732d.zip
0 files changed, 0 insertions, 0 deletions
diff --git a/gnu/bootloader.scm b/gnu/bootloader.scm
index 6d7352ddd2..d1c72c0c85 100644
--- a/gnu/bootloader.scm
+++ b/gnu/bootloader.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2017 David Craven <david@craven.ch>
 ;;; Copyright © 2017, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
-;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2021 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -25,7 +25,10 @@
   #:use-module (guix gexp)
   #:use-module (guix profiles)
   #:use-module (guix records)
-  #:use-module (guix ui)
+  #:use-module (guix deprecation)
+  #:use-module ((guix ui) #:select (warn-about-load-error))
+  #:use-module (guix diagnostics)
+  #:use-module (guix i18n)
   #:use-module (srfi srfi-1)
   #:use-module (ice-9 match)
   #:export (menu-entry
@@ -55,7 +58,8 @@
             bootloader-configuration
             bootloader-configuration?
             bootloader-configuration-bootloader
-            bootloader-configuration-target
+            bootloader-configuration-target ;deprecated
+            bootloader-configuration-targets
             bootloader-configuration-menu-entries
             bootloader-configuration-default-entry
             bootloader-configuration-timeout
@@ -179,12 +183,17 @@ record."
 ;; The <bootloader-configuration> record contains bootloader independant
 ;; configuration used to fill bootloader configuration file.
 
+(define-syntax-rule (warn-target-field-deprecation value)
+  (%warn-target-field-deprecation value (current-source-location)))
+
 (define-record-type* <bootloader-configuration>
   bootloader-configuration make-bootloader-configuration
   bootloader-configuration?
   (bootloader         bootloader-configuration-bootloader) ;<bootloader>
-  (target             bootloader-configuration-target      ;string
+  (targets            %bootloader-configuration-targets    ;list of strings
                       (default #f))
+  (target             %bootloader-configuration-target ;deprecated
+                      (default #f) (sanitize warn-target-field-deprecation))
   (menu-entries       bootloader-configuration-menu-entries ;list of <menu-entry>
                       (default '()))
   (default-entry      bootloader-configuration-default-entry ;integer
@@ -204,6 +213,26 @@ record."
   (serial-speed       bootloader-configuration-serial-speed ;integer | #f
                       (default #f)))
 
+(define (%warn-target-field-deprecation value location)
+  (when value
+    (warning (source-properties->location location)
+             (G_ "the 'target' field is deprecated, please use 'targets' \
+instead~%")))
+  value)
+
+(define-deprecated (bootloader-configuration-target config)
+  bootloader-configuration-targets
+  (%bootloader-configuration-target config))
+
+(define (bootloader-configuration-targets config)
+  (or (%bootloader-configuration-targets config)
+      ;; TODO: Remove after the deprecated 'target' field is removed.
+      (list (%bootloader-configuration-target config))
+      ;; XXX: At least the GRUB installer (see (gnu bootloader grub)) has this
+      ;; peculiar behavior of installing fonts and GRUB modules when DEVICE is #f,
+      ;; hence the default value of '(#f) rather than '().
+      (list #f)))
+
 
 ;;;
 ;;; Bootloaders.
diff --git a/gnu/bootloader/grub.scm b/gnu/bootloader/grub.scm
index ce146aba3c..d8e888ff40 100644
--- a/gnu/bootloader/grub.scm
+++ b/gnu/bootloader/grub.scm
@@ -647,11 +647,12 @@ below the directory TARGET for the system whose root is mounted at MOUNT-POINT.
 MOUNT-POINT is the last argument in 'guix system init /etc/config.scm mnt/point'
 or '/' for other 'guix system' commands.
 
-TARGET is the target argument given to the bootloader-configuration in
+Where TARGET comes from the targets argument given to the
+bootloader-configuration in:
 
 (operating-system
  (bootloader (bootloader-configuration
-              (target \"/boot\")
+              (targets '(\"/boot\"))
               …))
  …)
 
diff --git a/gnu/build/image.scm b/gnu/build/image.scm
index 45eed0b298..6eb0290256 100644
--- a/gnu/build/image.scm
+++ b/gnu/build/image.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
+;;; Copyright © 2016 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
diff --git a/gnu/build/vm.scm b/gnu/build/vm.scm
index 253d9bcd31..9d32824764 100644
--- a/gnu/build/vm.scm
+++ b/gnu/build/vm.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
+;;; Copyright © 2016 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
diff --git a/gnu/installer/parted.scm b/gnu/installer/parted.scm
index 1f9cec1d11..c000b1dec2 100644
--- a/gnu/installer/parted.scm
+++ b/gnu/installer/parted.scm
@@ -1356,9 +1356,9 @@ from (gnu system mapped-devices) and return it."
     `((bootloader-configuration
        ,@(if (efi-installation?)
              `((bootloader grub-efi-bootloader)
-               (target ,(default-esp-mount-point)))
+               (targets (list ,(default-esp-mount-point))))
              `((bootloader grub-bootloader)
-               (target ,root-partition-disk)))
+               (targets (list ,root-partition-disk))))
 
        ;; XXX: Assume we defined the 'keyboard-layout' field of
        ;; <operating-system> right above.
diff --git a/gnu/local.mk b/gnu/local.mk
index eab40771b5..7e5d648dbf 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -188,7 +188,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/docbook.scm			\
   %D%/packages/docker.scm			\
   %D%/packages/documentation.scm		\
-  %D%/packages/drones.scm			\
   %D%/packages/dunst.scm			\
   %D%/packages/dvtm.scm				\
   %D%/packages/easyrpg.scm			\
@@ -385,6 +384,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/mercury.scm			\
   %D%/packages/mes.scm				\
   %D%/packages/messaging.scm			\
+  %D%/packages/minetest.scm			\
   %D%/packages/mingw.scm			\
   %D%/packages/microcom.scm			\
   %D%/packages/moe.scm				\
@@ -494,6 +494,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/rednotebook.scm			\
   %D%/packages/regex.scm				\
   %D%/packages/robotics.scm			\
+  %D%/packages/rocm.scm				\
   %D%/packages/rpc.scm				\
   %D%/packages/rpm.scm				\
   %D%/packages/rrdtool.scm			\
@@ -670,6 +671,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/system/mapped-devices.scm			\
   %D%/system/nss.scm				\
   %D%/system/pam.scm				\
+  %D%/system/setuid.scm				\
   %D%/system/shadow.scm				\
   %D%/system/uuid.scm				\
   %D%/system/vm.scm				\
@@ -808,6 +810,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/abseil-cpp-fix-gtest.patch		\
   %D%/packages/patches/abseil-cpp-fix-strerror_test.patch	\
   %D%/packages/patches/adb-add-libraries.patch			\
+  %D%/packages/patches/adb-libssl_11-compatibility.patch	\
   %D%/packages/patches/aegis-constness-error.patch         	\
   %D%/packages/patches/aegis-perl-tempdir1.patch           	\
   %D%/packages/patches/aegis-perl-tempdir2.patch           	\
@@ -880,7 +883,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/bsd-games-prevent-name-collisions.patch	\
   %D%/packages/patches/bsd-games-stdio.h.patch			\
   %D%/packages/patches/beancount-disable-googleapis-fonts.patch	\
-  %D%/packages/patches/beets-werkzeug-compat.patch		\
   %D%/packages/patches/behave-skip-a-couple-of-tests.patch	\
   %D%/packages/patches/beignet-correct-file-names.patch		\
   %D%/packages/patches/bidiv-update-fribidi.patch		\
@@ -1415,6 +1417,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/luit-posix.patch				\
   %D%/packages/patches/lvm2-static-link.patch			\
   %D%/packages/patches/mailutils-fix-uninitialized-variable.patch	\
+  %D%/packages/patches/mailutils-variable-lookup.patch		\
   %D%/packages/patches/make-impure-dirs.patch			\
   %D%/packages/patches/marble-qt-add-qt-headers.patch		\
   %D%/packages/patches/mariadb-CVE-2021-27928.patch		\
@@ -1436,6 +1439,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mescc-tools-boot.patch			\
   %D%/packages/patches/metabat-fix-compilation.patch		\
   %D%/packages/patches/mhash-keygen-test-segfault.patch		\
+  %D%/packages/patches/minetest-add-MINETEST_MOD_PATH.patch	\
   %D%/packages/patches/mingw-w64-6.0.0-gcc.patch		\
   %D%/packages/patches/mingw-w64-dlltool-temp-prefix.patch	\
   %D%/packages/patches/mingw-w64-reproducible-gendef.patch	\
@@ -1504,6 +1508,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/ocaml-dose3-Install-mli-cmx-etc.patch	\
   %D%/packages/patches/ocaml-multiple-definitions.patch		\
   %D%/packages/patches/ocaml-4.09-multiple-definitions.patch	\
+  %D%/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch	\
   %D%/packages/patches/omake-fix-non-determinism.patch	\
   %D%/packages/patches/oneko-remove-nonfree-characters.patch	\
   %D%/packages/patches/onnx-optimizer-system-library.patch	\
@@ -1619,6 +1624,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch \
   %D%/packages/patches/python-configobj-setuptools.patch	\
   %D%/packages/patches/python-docopt-pytest6-compat.patch	\
+  %D%/packages/patches/python-execnet-read-only-fix.patch	\
   %D%/packages/patches/python-fixtures-remove-monkeypatch-test.patch	\
   %D%/packages/patches/python-flask-restful-werkzeug-compat.patch	\
   %D%/packages/patches/python-keras-integration-test.patch	\
@@ -1627,7 +1633,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-flint-includes.patch		\
   %D%/packages/patches/python-libxml2-utf8.patch		\
   %D%/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch	\
-  %D%/packages/patches/python-mediafile-wavpack.patch		\
   %D%/packages/patches/python-memcached-syntax-warnings.patch	\
   %D%/packages/patches/python-mox3-python3.6-compat.patch	\
   %D%/packages/patches/python-typing-inspect-fix.patch		\
@@ -1636,9 +1641,12 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-paste-remove-timing-test.patch	\
   %D%/packages/patches/python-pycrypto-CVE-2013-7459.patch	\
   %D%/packages/patches/python-pycrypto-time-clock.patch		\
+  %D%/packages/patches/python-pyan3-fix-absolute-path-bug.patch \
+  %D%/packages/patches/python-pyan3-fix-positional-arguments.patch \
   %D%/packages/patches/python-pydot-regression-test.patch	\
   %D%/packages/patches/python2-pygobject-2-deprecation.patch	\
   %D%/packages/patches/python-pygpgme-fix-pinentry-tests.patch	\
+  %D%/packages/patches/python-pytest-asyncio-python-3.8.patch	\
   %D%/packages/patches/python-pytorch-runpath.patch		\
   %D%/packages/patches/python-pytorch-system-libraries.patch	\
   %D%/packages/patches/python-robotframework-source-date-epoch.patch \
@@ -1777,6 +1785,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/tup-unbundle-dependencies.patch		\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
   %D%/packages/patches/twinkle-bcg729.patch			\
+  %D%/packages/patches/u-boot-nintendo-nes-serial.patch		\
   %D%/packages/patches/u-boot-rockchip-inno-usb.patch		\
   %D%/packages/patches/u-boot-sifive-prevent-reloc-initrd-fdt.patch	\
   %D%/packages/patches/u-boot-riscv64-fix-extlinux.patch	\
diff --git a/gnu/machine/digital-ocean.scm b/gnu/machine/digital-ocean.scm
index d97c300d18..90b66a54d9 100644
--- a/gnu/machine/digital-ocean.scm
+++ b/gnu/machine/digital-ocean.scm
@@ -235,7 +235,7 @@ cat > /etc/bootstrap-config.scm << EOF
   (timezone \"Etc/UTC\")
   (bootloader (bootloader-configuration
                (bootloader grub-bootloader)
-               (target \"/dev/vda\")
+               (targets '(\"/dev/vda\"))
                (terminal-outputs '(console))))
   (file-systems (cons (file-system
                         (mount-point \"/\")
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 082f3d3130..8d6ae9eb1f 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -17,7 +17,7 @@
 ;;; Copyright © 2016 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au>
 ;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com>
-;;; Copyright © 2017 Christopher Allan Webber <cwebber@dustycloud.org>
+;;; Copyright © 2017 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2017, 2018, 2020 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
@@ -29,7 +29,7 @@
 ;;; Copyright © 2019 Hartmut Goebel <h.goebel@crazy-compilers.com>
 ;;; Copyright © 2019 Alex Griffin <a@ajgrf.com>
 ;;; Copyright © 2019, 2021 Guillaume Le Vaillant <glv@posteo.net>
-;;; Copyright © 2019, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2019, 2020, 2021 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2020 Oleg Pykhalov <go.wigust@gmail.com>
 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de>
@@ -43,6 +43,8 @@
 ;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz>
 ;;; Copyright © 2021 WinterHound <winterhound@yandex.com>
 ;;; Copyright © 2021 Brice Waegeneire <brice@waegenei.re>
+;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -135,11 +137,14 @@
   #:use-module (gnu packages qt)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages ruby)
+  #:use-module (gnu packages selinux)
   #:use-module (gnu packages serialization)
+  #:use-module (gnu packages ssh)
   #:use-module (gnu packages sphinx)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages terminals)
   #:use-module (gnu packages texinfo)
+  #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages web)
@@ -834,6 +839,17 @@ hostname.")
 
        #:phases
        (modify-phases %standard-phases
+         ,@(if (%current-target-system)
+               '((add-before 'configure 'set-runtime-shell
+                   (lambda* (#:key inputs #:allow-other-keys)
+                     (let ((shell (string-append
+                                   (assoc-ref inputs "bash")
+                                   "/bin/bash")))
+                       (setenv "RUNTIME_SHELL" shell)
+                       (substitute* "configure.ac"
+                         (("\\$SHELL")
+                          "$RUNTIME_SHELL"))))))
+               '())
          (add-before 'build 'set-nscd-file-name
            (lambda* (#:key inputs #:allow-other-keys)
              ;; Use the right file name for nscd.
@@ -858,7 +874,10 @@ hostname.")
     (inputs
      `(,@(if (hurd-target?)
            '()
-           `(("linux-pam" ,linux-pam)))))
+           `(("linux-pam" ,linux-pam)))
+       ,@(if (%current-target-system)
+             `(("bash" ,bash-minimal))
+             '())))
     (home-page "https://github.com/shadow-maint/shadow")
     (synopsis "Authentication-related tools such as passwd, su, and login")
     (description
@@ -1248,7 +1267,11 @@ connection alive.")
                            "--owner=root:0"
                            "--group=root:0")))))
            (add-after 'install 'post-install
-             (lambda* (#:key inputs outputs #:allow-other-keys)
+             ;; TODO(core-updates): native-inputs isn't required anymore.
+             (lambda* (#:key ,@(if (%current-target-system)
+                                   '(native-inputs)
+                                   '())
+                       inputs outputs #:allow-other-keys)
                ;; Install the dhclient script for GNU/Linux and make sure
                ;; if finds all the programs it needs.
                (let* ((out       (assoc-ref outputs "out"))
@@ -1272,6 +1295,19 @@ connection alive.")
                              (string-append dir "/bin:"
                                             dir "/sbin"))
                            (list inetutils net-tools coreutils sed))))
+                 ;; TODO(core-updates): should not be required anymore,
+                 ;; once <https://issues.guix.gnu.org/49290> has been merged.
+                 ,@(if (%current-target-system)
+                       '((for-each
+                          (lambda (file)
+                            (substitute* file
+                              (((assoc-ref native-inputs "bash"))
+                               (assoc-ref inputs "bash"))))
+                          (list (string-append libexec
+                                               "/dhclient-script")
+                                (string-append libexec
+                                               "/.dhclient-script-real"))))
+                       '())
                  #t))))))
 
       (native-inputs
@@ -1279,6 +1315,11 @@ connection alive.")
          ("file" ,file)))
 
       (inputs `(("inetutils" ,inetutils)
+                ;; TODO(core-updates): simply make this unconditional
+                ,@(if (%current-target-system)
+                      ;; for wrap-program
+                      `(("bash" ,(canonical-package bash-minimal)))
+                      '())
                 ,@(if (hurd-target?) '()
                       `(("net-tools" ,net-tools)
                         ("iproute" ,iproute)))
@@ -2477,40 +2518,29 @@ Statsd, Librato and InfluxDB.  Graphios can emit Nagios metrics to any number
 of supported upstream metrics systems simultaneously.")
    (license license:gpl2+)))
 
-(define-public ansible
+(define-public ansible-core
   (package
-    (name "ansible")
-    (version "2.9.18")
+    (name "ansible-core")
+    (version "2.11.4")
     (source
      (origin
        (method url-fetch)
-       (uri (pypi-uri "ansible" version))
+       (uri (pypi-uri "ansible-core" version))
        (sha256
-        (base32 "0g6rsnh02zq5nizamgakl2wvgz7hk1lpnjn9akldrcpa55vygzjm"))))
+        (base32
+         "0jgahcv2pyc5ky0wir55a1h9q9d6rgqj60rqmvlpbj76vz1agsi2"))))
     (build-system python-build-system)
-    (native-inputs
-     `(("python-bcrypt" ,python-bcrypt)
-       ("python-pynacl" ,python-pynacl)
-       ("python-httplib2" ,python-httplib2)
-       ("python-passlib" ,python-passlib)
-       ("python-nose" ,python-nose)
-       ("python-mock" ,python-mock)
-       ("python-jinja2" ,python-jinja2)
-       ("python-pyyaml" ,python-pyyaml)
-       ("python-paramiko" ,python-paramiko)))
-    (inputs
-     `(("python-cryptography" ,python-cryptography)
-       ("python-jinja2" ,python-jinja2)
-       ("python-pyyaml" ,python-pyyaml)
-       ("python-paramiko" ,python-paramiko)))
     (arguments
-     `(#:phases
+     `(#:modules ((guix build python-build-system)
+                  (guix build utils)
+                  (ice-9 ftw))
+       #:phases
        (modify-phases %standard-phases
          ;; Several ansible commands (ansible-config, ansible-console, etc.)
-         ;; are just symlinks to a single ansible executable. The ansible
-         ;; executable behaves differently based on the value of
-         ;; sys.argv[0]. This does not work well with our wrap phase, and
-         ;; therefore the following two phases are required as a workaround.
+         ;; are just symlinks to a single ansible executable.  The ansible
+         ;; executable behaves differently based on the value of sys.argv[0].
+         ;; This does not work well with our wrap phase, and therefore the
+         ;; following two phases are required as a workaround.
          (add-after 'unpack 'hide-wrapping
            (lambda _
              ;; Overwrite sys.argv[0] to hide the wrapper script from it.
@@ -2519,27 +2549,138 @@ of supported upstream metrics systems simultaneously.")
                 (string-append all "
 import re
 sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
-")))
-             #t))
+")))))
          (add-after 'install 'replace-symlinks
            (lambda* (#:key outputs #:allow-other-keys)
              ;; Replace symlinks with duplicate copies of the ansible
-             ;; executable.
-             (let ((out (assoc-ref outputs "out")))
+             ;; executable so that sys.argv[0] has the correct value.
+             (define bin (string-append (assoc-ref outputs "out") "/bin"))
+             (with-directory-excursion bin
                (for-each
-                (lambda (subprogram)
-                  (delete-file (string-append out "/bin/ansible-" subprogram))
-                  (copy-file (string-append out "/bin/ansible")
-                             (string-append out "/bin/ansible-" subprogram)))
-                (list "config" "console" "doc" "galaxy"
-                      "inventory" "playbook" "pull" "vault")))
-             #t)))))
+                (lambda (ansible-symlink)
+                  (delete-file ansible-symlink)
+                  (copy-file "ansible" ansible-symlink))
+                (scandir "." (lambda (x)
+                               (and (eq? 'symlink (stat:type (lstat x)))
+                                    (string-prefix? "ansible-" x)
+                                    (string=? "ansible" (readlink x)))))))))
+         (add-after 'unpack 'preserve-pythonpath
+           (lambda _
+             (substitute* "test/lib/ansible_test/_internal/ansible_util.py"
+               (("PYTHONPATH=get_ansible_python_path\\(args\\)" all)
+                (string-append all "+ ':' + os.environ['PYTHONPATH']")))))
+         (add-after 'unpack 'patch-paths
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (substitute* "lib/ansible/module_utils/compat/selinux.py"
+               (("libselinux.so.1" name)
+                (string-append (assoc-ref inputs "libselinux")
+                               "/lib/" name)))
+             (substitute* "test/units/modules/test_async_wrapper.py"
+               (("/usr/bin/python")
+                (which "python")))))
+         (replace 'check
+           ;; The environment for the test suite can be tricky to get right.
+           ;; The environment used for Ansible's CI defined in the following
+           ;; Dockerfile can be used as a reference:
+           ;; https://raw.githubusercontent.com/ansible/
+           ;; default-test-container/master/Dockerfile.
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               ;; Otherwise Ansible fails to create its config directory.
+               (setenv "HOME" "/tmp")
+               (setenv "PATH" (string-append (getenv "PATH") ":"
+                                             (assoc-ref outputs "out") "/bin"))
+               (add-installed-pythonpath inputs outputs)
+               ;; This test module messes up with sys.path and causes many
+               ;; test failures.
+               (delete-file "test/units/_vendor/test_vendor.py")
+               ;; The test fails when run in the container, for reasons
+               ;; unknown.
+               (delete-file "test/units/utils/test_display.py")
+               ;; This test fail for reasons unknown.
+               (delete-file "test/units/cli/test_adhoc.py")
+               ;; The test suite needs to be run with 'ansible-test', which
+               ;; does some extra environment setup.  Taken from
+               ;; https://raw.githubusercontent.com/ansible/ansible/\
+               ;; devel/test/utils/shippable/shippable.sh.
+               (invoke "ansible-test" "units" "-v")))))))
+    (native-inputs
+     `(("openssh" ,openssh)
+       ("openssl" ,openssl)
+       ("python-mock" ,python-mock)
+       ("python-pycrypto" ,python-pycrypto)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-forked" ,python-pytest-forked)
+       ("python-pytest-mock" ,python-pytest-mock)
+       ("python-pytest-xdist" ,python-pytest-xdist)
+       ("python-pytz" ,python-pytz)))
+    (inputs                    ;optional dependencies captured in wrap scripts
+     `(("libselinux" ,libselinux)
+       ("python-paramiko" ,python-paramiko)
+       ("python-passlib" ,python-passlib)
+       ("python-pexpect" ,python-pexpect)
+       ("sshpass" ,sshpass)))
+    (propagated-inputs      ;core dependencies listed in egg-info/requires.txt
+     `(("python-cryptography" ,python-cryptography)
+       ("python-jinja2" ,python-jinja2)
+       ("python-pyyaml" ,python-pyyaml)
+       ("python-packaging" ,python-packaging) ;for version number parsing
+       ("python-resolvelib" ,python-resolvelib-0.5)))
     (home-page "https://www.ansible.com/")
     (synopsis "Radically simple IT automation")
-    (description "Ansible is a radically simple IT automation system.  It
-handles configuration management, application deployment, cloud provisioning,
-ad hoc task execution, and multinode orchestration---including trivializing
-things like zero-downtime rolling updates with load balancers.")
+    (description "Ansible aims to be a radically simple IT automation system.
+It handles configuration management, application deployment, cloud
+provisioning, ad-hoc task execution, network automation, and multi-node
+orchestration.  Ansible facilitates complex changes like zero-downtime rolling
+updates with load balancers.  This package is the core of Ansible, which
+provides the following commands:
+@itemize
+@item ansible
+@item ansible-config
+@item ansible-connection
+@item ansible-console
+@item ansible-doc
+@item ansible-galaxy
+@item ansible-inventory
+@item ansible-playbook
+@item ansible-pull
+@item ansible-test
+@item ansible-vault
+@end itemize")
+    (license license:gpl3+)))
+
+(define-public ansible
+  (package
+    (name "ansible")
+    (version "4.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ansible" version))
+       (sha256
+        (base32 "031n22j0lsmh69x6i6gkva81j68b4yzh1pbg3q2h4bknl85q46ag"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("ansible-core" ,ansible-core)))
+    ;; The Ansible collections are found by ansible-core via PYTHONPATH; the
+    ;; following search path ensures that they are found even when Python is
+    ;; not present in the profile.
+    (native-search-paths
+     ;; XXX: Attempting to use (package-native-search-paths python)
+     ;; here would cause an error about python being an unbound
+     ;; variable in the tests/cpan.scm test.
+     (list (search-path-specification
+            (variable "PYTHONPATH")
+            (files (list "lib/python3.8/site-packages")))))
+    (home-page "https://www.ansible.com/")
+    (synopsis "Radically simple IT automation")
+    (description "Ansible aims to be a radically simple IT automation system.
+It handles configuration management, application deployment, cloud
+provisioning, ad-hoc task execution, network automation, and multi-node
+orchestration.  Ansible facilitates complex changes like zero-downtime rolling
+updates with load balancers.  This package provides a curated set of
+community-maintained Ansible collections, which contain playbooks, roles,
+modules and plugins that extend Ansible.")
     (license license:gpl3+)))
 
 (define-public debops
@@ -3401,7 +3542,7 @@ buffers.")
 (define-public igt-gpu-tools
   (package
     (name "igt-gpu-tools")
-    (version "1.25")
+    (version "1.26")
     (source
      (origin
        (method git-fetch)
@@ -3410,7 +3551,7 @@ buffers.")
              (commit (string-append "igt-gpu-tools-" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1lvhkdhilw0fn4nzkpfwvrhiv8d92h811qs2v6ac3p5w7v86a9zm"))))
+        (base32 "0m124pqv7zna25jnvk566c4kk628jr0w8mgnp8mr5xqz9cprgczm"))))
     (build-system meson-build-system)
     (arguments
      `(#:tests? #f))            ; many of the tests try to load kernel modules
@@ -3846,7 +3987,7 @@ Python loading in HPC environments.")
   (let ((real-name "inxi"))
     (package
       (name "inxi-minimal")
-      (version "3.3.04-1")
+      (version "3.3.06-1")
       (source
        (origin
          (method git-fetch)
@@ -3855,7 +3996,7 @@ Python loading in HPC environments.")
                (commit version)))
          (file-name (git-file-name real-name version))
          (sha256
-          (base32 "1rrhycp8i43yf9wi80n4pq2hkfhvb2rg1srz8if28bh6fhhasjzw"))))
+          (base32 "1qk40iyrdp52vmbiqwxicvlcycm2v2bf1gg4lzq0b4619sd6d1m7"))))
       (build-system trivial-build-system)
       (inputs
        `(("bash" ,bash-minimal)
@@ -4427,14 +4568,14 @@ Netgear devices.")
 (define-public atop
   (package
     (name "atop")
-    (version "2.5.0")
+    (version "2.6.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.atoptool.nl/download/atop-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0crzz4i2nabyh7d6xg7fvl65qls87nbca5ihidp3nijhrrbi14ab"))))
+                "0wlg0n0h9vwpjp2dcb623jvvqck422jrjpq9mbpzg4hnawxcmhly"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no test suite
@@ -4626,3 +4767,49 @@ the XMODEM/YMODEM/ZMODEM file transfer protocols.")
 setup, maintenance, supervision, or any long-running processes.")
     (home-page "https://github.com/leahneukirchen/nq")
     (license license:public-domain)))
+
+(define-public lsofgraph
+  (let ((commit "1d414bdc727c00a8c6cbfffc3c43128c60d6f0de")
+        (revision "1"))
+    (package
+      (name "lsofgraph")
+      (version (git-version "0.0.1" revision commit)) ;no upstream release
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/zevv/lsofgraph")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "058x04yp6bc77hbl3qchqm7pa8f9vqfl9jryr88m8pzl7kvpif54"))))
+      (build-system trivial-build-system)
+      (inputs
+       `(("lua" ,lua)))
+      (arguments
+       `(#:modules ((guix build utils))
+         #:builder
+         (begin
+           (use-modules (guix build utils))
+           ;; copy source
+           (copy-recursively (assoc-ref %build-inputs "source") ".")
+           ;; patch-shebang phase
+           (setenv "PATH"
+                   (string-append (assoc-ref %build-inputs "lua") "/bin"
+                                  ":" (getenv "PATH")))
+           (substitute* "lsofgraph"
+             (("#!/usr/bin/env lua")
+              (string-append "#!" (which "lua"))))
+           ;; install phase
+           (install-file "lsofgraph" (string-append %output "/bin"))
+           (let ((doc (string-append
+                       %output "/share/doc/" ,name "-" ,version)))
+             (mkdir-p doc)
+             (install-file "LICENSE" doc)
+             (install-file "README.md" doc))
+           #t)))
+      (home-page "https://github.com/zevv/lsofgraph")
+      (synopsis "Convert @code{lsof} output to @code{graphviz}")
+      (description "Utility to convert @code{lsof} output to a graph showing
+FIFO and UNIX interprocess communication.")
+      (license license:bsd-2))))
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 2d37e5298e..6743223987 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -343,7 +343,7 @@ precision.")
 (define-public giac
   (package
     (name "giac")
-    (version "1.7.0-25")
+    (version "1.7.0-29")
     (source
      (origin
        (method url-fetch)
@@ -355,7 +355,7 @@ precision.")
                            "~parisse/debian/dists/stable/main/source/"
                            "giac_" version ".tar.gz"))
        (sha256
-        (base32 "0d11shsifnd5p23iym5h0kqa7bp7p0p25rwvya7hdji2kwvgr3cl"))))
+        (base32 "1dw0mh212ri9viks15cn75m38m4q4nj3hlv2bbrpdz8sgnnssz0a"))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((ice-9 ftw)
diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index cb3f491eae..448e2dfbac 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -150,6 +150,7 @@ use their packages mostly unmodified in our Android NDK build system.")
                      "libutils-remove-damaging-includes.patch"
                      "libutils-add-includes.patch"
                      "adb-add-libraries.patch"
+                     "adb-libssl_11-compatibility.patch"
                      "libziparchive-add-includes.patch"))))
 
 (define (android-platform-system-extras version)
@@ -392,7 +393,7 @@ various Android core host applications.")
      `(("android-libbase" ,android-libbase)
        ("android-libcutils" ,android-libcutils)
        ("android-liblog" ,android-liblog)
-       ("openssl" ,openssl-1.0)))
+       ("openssl" ,openssl)))
     (home-page "https://developer.android.com/studio/command-line/adb.html")
     (synopsis "Android Debug Bridge")
     (description
diff --git a/gnu/packages/assembly.scm b/gnu/packages/assembly.scm
index 177ea0b74f..2167eb2dbb 100644
--- a/gnu/packages/assembly.scm
+++ b/gnu/packages/assembly.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2019 Guy Fleury Iteriteka <hoonandon@gmail.com>
 ;;; Copyright © 2019 Andy Tai <atai@atai.org>
 ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
-;;; Copyright © 2020 Christopher Lemmer Webber <cwebber@dustycloud.org>
+;;; Copyright © 2020 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com>
 ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;;
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 76c404e735..0770e3de20 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -24,7 +24,7 @@
 ;;; Copyright © 2019, 2021 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2019, 2020 Alexandros Theodotou <alex@zrythm.org>
-;;; Copyright © 2019 Christopher Lemmer Webber <cwebber@dustycloud.org>
+;;; Copyright © 2019 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2019 Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl>
 ;;; Copyright © 2019 Hartmt Goebel <h.goebel@crazy-compilers.com>
 ;;; Copyright © 2019, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
@@ -571,7 +571,7 @@ streams from live audio.")
 (define-public ardour
   (package
     (name "ardour")
-    (version "6.6")
+    (version "6.8")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -589,7 +589,7 @@ namespace ARDOUR { const char* revision = \"" version "\" ; const char* date = \
                     #t)))
               (sha256
                (base32
-                "0k5rxh8b3d8si3lj01gfqj0pmd448d8sj4asnb205mwhwbfgn0cp"))
+                "16x7bkzbrk0rgywq5vrkhf2z3jj08jw1bvaq9vwlf2b4h4sd7i4s"))
               (file-name (string-append name "-" version))))
     (build-system waf-build-system)
     (arguments
@@ -2829,14 +2829,14 @@ different audio devices such as ALSA or PulseAudio.")
 (define-public qjackctl
   (package
     (name "qjackctl")
-    (version "0.9.3")
+    (version "0.9.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/qjackctl/qjackctl/"
                                   version "/qjackctl-" version ".tar.gz"))
               (sha256
                (base32
-                "065x66rr1mb2bkqr88l50rcn5c8rsiq4hp5hrlyqqg46371gzhp9"))))
+                "186rg3j67rac9ds1r7gnrib2d0smgv15cmr5gwb7v83mywcp1gzy"))))
     (build-system cmake-build-system)
     (arguments
      '(#:tests? #f))                    ; no check target
@@ -5277,14 +5277,14 @@ while still staying in time.")
 (define-public butt
   (package
     (name "butt")
-    (version "0.1.30")
+    (version "0.1.31")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/butt/butt/butt-"
                                   version "/butt-" version ".tar.gz"))
               (sha256
                (base32
-                "1dfspdh3f18lpp7asxpj63b9zfpvazi7shgrdacg17gd42ycayq5"))
+                "19zvdi5vr6vqnrpc60jir7550nz9a5x1c61lh13355cdny2zp28z"))
               (modules '((guix build utils)))
               (snippet
                '(substitute* "src/butt.cpp"
@@ -5325,7 +5325,7 @@ while still staying in time.")
                                         version "_manual.pdf"))
                     (sha256
                      (base32
-                      "1w3krh7f2v5vdz18hqycnpn0qv1x6xl6pa1najgp4jbfisjc1mn8"))))))
+                      "0a0kgd069whfp1v8xgw6qm67w02n8b7b4h5ay5665wgq947hxanp"))))))
     (home-page "https://danielnoethen.de/butt/")
     (synopsis "Audio streaming tool")
     (description "Butt is a tool to stream audio to a ShoutCast or
diff --git a/gnu/packages/aux-files/linux-libre/5.10-i686.conf b/gnu/packages/aux-files/linux-libre/5.10-i686.conf
index e400c42362..cb1fdc37ad 100644
--- a/gnu/packages/aux-files/linux-libre/5.10-i686.conf
+++ b/gnu/packages/aux-files/linux-libre/5.10-i686.conf
@@ -10612,7 +10612,7 @@ CONFIG_BRANCH_PROFILE_NONE=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf
index bf4451c994..cd61860af9 100644
--- a/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf
+++ b/gnu/packages/aux-files/linux-libre/5.10-x86_64.conf
@@ -10620,7 +10620,7 @@ CONFIG_BRANCH_PROFILE_NONE=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/aux-files/linux-libre/5.13-i686.conf b/gnu/packages/aux-files/linux-libre/5.13-i686.conf
index d123117716..209c597464 100644
--- a/gnu/packages/aux-files/linux-libre/5.13-i686.conf
+++ b/gnu/packages/aux-files/linux-libre/5.13-i686.conf
@@ -10765,7 +10765,7 @@ CONFIG_BRANCH_PROFILE_NONE=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/aux-files/linux-libre/5.13-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.13-x86_64.conf
index e268705a71..b07a37a85d 100644
--- a/gnu/packages/aux-files/linux-libre/5.13-x86_64.conf
+++ b/gnu/packages/aux-files/linux-libre/5.13-x86_64.conf
@@ -10831,7 +10831,7 @@ CONFIG_BRANCH_PROFILE_NONE=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/aux-files/linux-libre/5.4-i686.conf b/gnu/packages/aux-files/linux-libre/5.4-i686.conf
index 898c66ebf9..4e2d7795c7 100644
--- a/gnu/packages/aux-files/linux-libre/5.4-i686.conf
+++ b/gnu/packages/aux-files/linux-libre/5.4-i686.conf
@@ -10214,7 +10214,7 @@ CONFIG_STACK_TRACER=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/aux-files/linux-libre/5.4-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.4-x86_64.conf
index 19fdeb7e70..5815caa770 100644
--- a/gnu/packages/aux-files/linux-libre/5.4-x86_64.conf
+++ b/gnu/packages/aux-files/linux-libre/5.4-x86_64.conf
@@ -10164,7 +10164,7 @@ CONFIG_STACK_TRACER=y
 CONFIG_BLK_DEV_IO_TRACE=y
 CONFIG_KPROBE_EVENTS=y
 # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
-# CONFIG_UPROBE_EVENTS is not set
+CONFIG_UPROBE_EVENTS=y
 CONFIG_BPF_EVENTS=y
 CONFIG_DYNAMIC_EVENTS=y
 CONFIG_PROBE_EVENTS=y
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index de85c36b59..e5237b3048 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2017 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2017 Christopher Allan Webber <cwebber@dustycloud.org>
+;;; Copyright © 2017 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm
index 577196e3df..d9796d2999 100644
--- a/gnu/packages/benchmark.scm
+++ b/gnu/packages/benchmark.scm
@@ -41,6 +41,7 @@
   #:use-module (gnu packages linux)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages mpi)
+  #:use-module (gnu packages opencl)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-science)
@@ -220,7 +221,7 @@ This can give a much better understanding of the command's performance.")
 (define-public benchmark
   (package
     (name "benchmark")
-    (version "1.5.5")
+    (version "1.5.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -229,7 +230,7 @@ This can give a much better understanding of the command's performance.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1ijv4idcjsyy61dab59ywbx0xdbws44kxgqjr1ylaxzwknh745qf"))))
+                "030g4d8vpn2442dsap0qw86lsw7xfl36k0x0x9bn0vvm11qvjn8c"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("googletest-source" ,(package-source googletest))
@@ -240,8 +241,7 @@ This can give a much better understanding of the command's performance.")
          (add-after 'unpack 'unpack-googletest
            (lambda* (#:key inputs #:allow-other-keys)
              (copy-recursively (assoc-ref inputs "googletest-source")
-                               "googletest")
-             #t)))))
+                               "googletest"))))))
     (home-page "https://github.com/google/benchmark")
     (synopsis "Microbenchmark support library")
     (description
@@ -384,3 +384,31 @@ It is designed to measure the effect of changes in Linux kernel design or
 system configuration changes such as CPU, I/O scheduler and filesystem changes
 and options.  With careful benchmarking, different hardware can be compared.")
     (license license:gpl2+)))
+
+(define-public clpeak
+  ;; Release 1.1.0 is too old for our opencl-clhpp. This commit supports
+  ;; cl2.hpp.
+  (let ((commit "6d59cb64997a53c35207b77a63d2e9f0e84de5fd"))
+    (package
+      (name "clpeak")
+      (version (git-version "1.1.0" "0" commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                       (url "https://github.com/krrishnarraj/clpeak.git")
+                       (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                  (base32
+                    "0qmhdjyhwl7gfgyqxsddqn6zpp3b57503m16h7jv6illy3lfvji1"))))
+      (build-system cmake-build-system)
+      (home-page "https://github.com/krrishnarraj/clpeak")
+      (inputs
+        `(("opencl-clhpp" ,opencl-clhpp)
+          ("opencl-icd-loader" ,opencl-icd-loader)))
+      (synopsis "OpenCL benchmark tool")
+      (description
+        "A synthetic benchmarking tool to measure peak capabilities of OpenCL
+        devices.  It only measures the peak metrics that can be achieved using
+        vector operations and does not represent a real-world use case.")
+        (license license:unlicense))))
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a85cf904f7..ea8a885c5f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2154,13 +2154,13 @@ on Bioconductor or which replace R functions.")
 (define-public r-biomart
   (package
     (name "r-biomart")
-    (version "2.48.2")
+    (version "2.48.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "biomaRt" version))
               (sha256
                (base32
-                "1na271z9gc3b7xfcghbljj9lqq6v9b2kb71xahsq544yv4z9w8xj"))))
+                "096s243yzbhhz3wsm7azml5sznqczmcpi5g0gnb02mah1przczfx"))))
     (properties
      `((upstream-name . "biomaRt")))
     (build-system r-build-system)
@@ -2247,13 +2247,13 @@ objects.")
 (define-public r-biostrings
   (package
     (name "r-biostrings")
-    (version "2.60.1")
+    (version "2.60.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "Biostrings" version))
               (sha256
                (base32
-                "1a2vq4rram7chnccx0piccgi0mlblmjh26y51bch86lxr7qwlr22"))))
+                "0ai0fg0w4l0a7avbafdbqjgjpg91myxalwrg2i3ixm1l2lyyfyah"))))
     (properties
      `((upstream-name . "Biostrings")))
     (build-system r-build-system)
@@ -2743,14 +2743,14 @@ CAGE.")
 (define-public r-ensembldb
   (package
     (name "r-ensembldb")
-    (version "2.16.3")
+    (version "2.16.4")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ensembldb" version))
        (sha256
         (base32
-         "1y3d6mx59531ixr8nzq57sa5nwimq3qyy1xabk52vvdbkl2aa52x"))))
+         "15yllkxr6sj5pfvkvv285nk3q5374nzq1iz8ywmnrq910k3xagd8"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-annotationdbi" ,r-annotationdbi)
@@ -3007,13 +3007,13 @@ alignments.")
 (define-public r-genomicfeatures
   (package
     (name "r-genomicfeatures")
-    (version "1.44.0")
+    (version "1.44.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "GenomicFeatures" version))
               (sha256
                (base32
-                "0y7lnvfcfrs72xbkn67xcqyz9csl5696mr2zl425fkhmnmimm4fg"))))
+                "0byizkq18kkyq3n604f38z4mikhi3szsrfrlz22wdq2ldq3nzkis"))))
     (properties
      `((upstream-name . "GenomicFeatures")))
     (build-system r-build-system)
@@ -3300,13 +3300,13 @@ Shiny-based display methods for Bioconductor objects.")
 (define-public r-limma
   (package
     (name "r-limma")
-    (version "3.48.1")
+    (version "3.48.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "limma" version))
               (sha256
                (base32
-                "1wscxvhrz16sfa0qwk9anxqjy1vgvqmq6ia9gx6pwpga8qzwn5bi"))))
+                "0385ac0hvvml99krcgcpp6q7layjhzgp9xcxkcjrpfg5mjg1z4sx"))))
     (build-system r-build-system)
     (home-page "http://bioinf.wehi.edu.au/limma")
     (synopsis "Package for linear models for microarray and RNA-seq data")
@@ -3987,13 +3987,13 @@ tab-delimited (tabix) files.")
 (define-public r-rtracklayer
   (package
     (name "r-rtracklayer")
-    (version "1.52.0")
+    (version "1.52.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "rtracklayer" version))
               (sha256
                (base32
-                "0iic0g0clsjd9ypdmfs6k52hrnmfszhxzg0xx89nszpasf69wghv"))))
+                "11w6dx09pb49lin1gr9q88xn7ixh9jd5z6m9z27djchm0nw10lx9"))))
     (build-system r-build-system)
     (arguments
      `(#:phases
@@ -4221,24 +4221,28 @@ graph construction.")
 (define-public r-structuralvariantannotation
   (package
     (name "r-structuralvariantannotation")
-    (version "1.8.1")
+    (version "1.8.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "StructuralVariantAnnotation" version))
        (sha256
-        (base32 "13q6zbdkpx1iw6n75pggg50f9q3zb7k3dxjdra8mhi6zin7018j8"))))
+        (base32 "04ac4mjh3pgdlws0aiacqg0vd7bhg890w44r7b90p947c3rk1mfw"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
        ("r-biocgenerics" ,r-biocgenerics)
        ("r-biostrings" ,r-biostrings)
        ("r-dplyr" ,r-dplyr)
+       ("r-genomeinfodb" ,r-genomeinfodb)
        ("r-genomicfeatures" ,r-genomicfeatures)
        ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
        ("r-rlang" ,r-rlang)
        ("r-rtracklayer" ,r-rtracklayer)
+       ("r-s4vectors" ,r-s4vectors)
        ("r-stringr" ,r-stringr)
+       ("r-summarizedexperiment" ,r-summarizedexperiment)
        ("r-variantannotation" ,r-variantannotation)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
@@ -4767,14 +4771,14 @@ signal in the input, that lead to spurious peaks during peak calling.")
 (define-public r-diffbind
   (package
     (name "r-diffbind")
-    (version "3.2.4")
+    (version "3.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "DiffBind" version))
        (sha256
         (base32
-         "024ff12v42yvcma29cis4f777jrdgmgfr06lxn6l3nh30ghxawci"))))
+         "1rp4sgx58g1lq5brpx07wffllhvsqq1097vrjiaksbih08338nih"))))
     (properties `((upstream-name . "DiffBind")))
     (build-system r-build-system)
     (propagated-inputs
@@ -5013,14 +5017,14 @@ determining dependencies between variables, code improvement suggestions.")
 (define-public r-chippeakanno
   (package
     (name "r-chippeakanno")
-    (version "3.26.2")
+    (version "3.26.3")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ChIPpeakAnno" version))
        (sha256
         (base32
-         "003550ygh0haxyyypsss7s03jlsx7cqkhly4fcz10maczi6j4l30"))))
+         "07dvg3r4kghkqhh1a8rw149hgfswmzdh9cvnam8c82006cpmi74s"))))
     (properties `((upstream-name . "ChIPpeakAnno")))
     (build-system r-build-system)
     (propagated-inputs
@@ -5067,13 +5071,13 @@ enrichedGO (addGeneIDs).")
 (define-public r-matrixgenerics
   (package
    (name "r-matrixgenerics")
-   (version "1.4.0")
+   (version "1.4.2")
    (source (origin
             (method url-fetch)
             (uri (bioconductor-uri "MatrixGenerics" version))
             (sha256
              (base32
-              "1xq3a9ls125wfnhn13rdbsxzq3f6klsspx7h0znd6l67f5j5k25s"))))
+              "0kjsc5ghcplay4a74ffpwsf3kbp51x6rl5265gvlfchdwrawkzd2"))))
    (properties
     `((upstream-name . "MatrixGenerics")))
    (build-system r-build-system)
@@ -5685,14 +5689,14 @@ multiplication.")
 (define-public r-treeio
   (package
     (name "r-treeio")
-    (version "1.16.1")
+    (version "1.16.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "treeio" version))
        (sha256
         (base32
-         "0ypl4h80m08sf7r4zfvqgvpsz46x15wvcl1idq5pd813bp1w2sws"))))
+         "1y60yvg1rl21cab9xrkns0209pg44mwr90qj099dvk97wsjkx67g"))))
     (properties `((upstream-name . "treeio")))
     (build-system r-build-system)
     (propagated-inputs
@@ -5717,14 +5721,14 @@ platform for merging tree with associated data and converting file formats.")
 (define-public r-ggtree
   (package
     (name "r-ggtree")
-    (version "3.0.2")
+    (version "3.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ggtree" version))
        (sha256
         (base32
-         "0i665b5jxgsv3ncxmczy7n0h911br44dw9f7m4jwv3pjmr5mm6vk"))))
+         "02ydi5iyxwrvwfjmv8pbanmzpi1r99mc4gxl17fpq2jf1d1mk6g0"))))
     (properties `((upstream-name . "ggtree")))
     (build-system r-build-system)
     (propagated-inputs
@@ -6241,14 +6245,14 @@ multiplication and calculation of row/column sums or means.")
 (define-public r-batchelor
   (package
     (name "r-batchelor")
-    (version "1.8.0")
+    (version "1.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "batchelor" version))
        (sha256
         (base32
-         "1xm204wp3m3mmlc1s59lscbbjvwm5nj32vvf16njcg7pb32lsiqa"))))
+         "1bkk69b5llkmvmpsnhymwjm2szmzypgszfsw8mak1b5ms5zf8lr0"))))
     (properties `((upstream-name . "batchelor")))
     (build-system r-build-system)
     (propagated-inputs
@@ -7242,14 +7246,14 @@ to multiple hypothesis correction.")
 (define-public r-dose
   (package
     (name "r-dose")
-    (version "3.18.1")
+    (version "3.18.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "DOSE" version))
        (sha256
         (base32
-         "1g3llrb51m8lj3prcr6ryxj0lf4qqzg9mzi36y71pp9qzfvf3c0k"))))
+         "0kp6j42mpxrpd02cjrzqmrx3rvvpi90xiy4gc5km6ny3vxbhlaqw"))))
     (properties `((upstream-name . "DOSE")))
     (build-system r-build-system)
     (propagated-inputs
@@ -7314,14 +7318,14 @@ All the visualization methods are developed based on ggplot2 graphics.")
 (define-public r-clusterprofiler
   (package
     (name "r-clusterprofiler")
-    (version "4.0.2")
+    (version "4.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "clusterProfiler" version))
        (sha256
         (base32
-         "11pjzh7inh1x0gry42nlq4har65s8pc0w3bkccm6kmxycvaxb9rh"))))
+         "161w9mn2plmymvzf1hkk9fwi3d9c26kbcpndyyrfcl6bg2nxr1s8"))))
     (properties
      `((upstream-name . "clusterProfiler")))
     (build-system r-build-system)
@@ -10877,14 +10881,14 @@ data.")
 (define-public r-universalmotif
   (package
     (name "r-universalmotif")
-    (version "1.10.1")
+    (version "1.10.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "universalmotif" version))
        (sha256
         (base32
-         "1hwp7802r4pr7yafzir9afqaim9l0vznglm35b0gxaca8k7a3jvy"))))
+         "0hv2v2zgif5ihr5hxmdz32rln43jc1j0rslp44kd3rijjl45zysn"))))
     (properties
      `((upstream-name . "universalmotif")))
     (build-system r-build-system)
@@ -11843,14 +11847,14 @@ analytics on packages.")
 (define-public r-biocset
   (package
     (name "r-biocset")
-    (version "1.6.0")
+    (version "1.6.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "BiocSet" version))
        (sha256
         (base32
-         "18zr0r4b4rblfmsiilipqdfxn9fgymx75hlxzx1wk3bm71ryk078"))))
+         "0nmrg9cgq8l9w467y364jghnvym05abpj8pyj90grmrib2xc5sj2"))))
     (properties `((upstream-name . "BiocSet")))
     (build-system r-build-system)
     (propagated-inputs
@@ -12469,14 +12473,14 @@ packages.")
 (define-public r-beachmat
   (package
     (name "r-beachmat")
-    (version "2.8.0")
+    (version "2.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "beachmat" version))
        (sha256
         (base32
-         "16p6shab4y8sy1adn4qr05ysvwmvs9idliccixafvx9icv5sla86"))))
+         "06bpfpddsl49csxrs8hlx5pv0absc2wdcparchf8qqaqydazwci2"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-biocgenerics" ,r-biocgenerics)
@@ -12704,14 +12708,14 @@ libraries.")
 (define-public r-scuttle
   (package
     (name "r-scuttle")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "scuttle" version))
        (sha256
         (base32
-         "1vxmgm52n5z2m1a7d4c5ajp5d35rdq7j3hln9qn7188zk9ijjsz5"))))
+         "015k879gg2r39lp6mz26jwmysa56k0ial6v74zzmbi8hnz9zic3i"))))
     (properties `((upstream-name . "scuttle")))
     (build-system r-build-system)
     (propagated-inputs
@@ -12822,14 +12826,14 @@ variable and significantly correlated genes.")
 (define-public r-sparsematrixstats
   (package
     (name "r-sparsematrixstats")
-    (version "1.4.0")
+    (version "1.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "sparseMatrixStats" version))
        (sha256
         (base32
-         "0ilspddfkqpnf2lng9jjs2ahv6vlc6sap69fzkcw314rha59kncr"))))
+         "0b22kzg751zlkcbs8pi0bcqrsj3imsg35qfvxfrqb7gav7qznc8v"))))
     (properties
      `((upstream-name . "sparseMatrixStats")))
     (build-system r-build-system)
@@ -12850,14 +12854,14 @@ data in the column sparse format.")
 (define-public r-delayedmatrixstats
   (package
     (name "r-delayedmatrixstats")
-    (version "1.14.0")
+    (version "1.14.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "DelayedMatrixStats" version))
        (sha256
         (base32
-         "02r68rzmc54m353fpw5ampyv26i5622bc7iihfqlpy6p3033lpqk"))))
+         "1avzd3fj4am9klmlx03nwq2pvgx7646yjwha1gqf0cbx5hibxy02"))))
     (properties
      `((upstream-name . "DelayedMatrixStats")))
     (build-system r-build-system)
@@ -13662,6 +13666,73 @@ starting site, start codon, stop codon and transcription ending site.")
 visualizations for publication-quality multi-panel figures.")
     (license license:gpl2+)))
 
+(define-public r-ballgown
+  (package
+    (name "r-ballgown")
+    (version "2.24.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "ballgown" version))
+       (sha256
+        (base32
+         "0ff8z4pfgzai2q4aafclg36bhsi9jwl9xhh1p9fqhmikisscq7i1"))))
+    (properties `((upstream-name . "ballgown")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-limma" ,r-limma)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-rtracklayer" ,r-rtracklayer)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-sva" ,r-sva)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/ballgown")
+    (synopsis "Flexible, isoform-level differential expression analysis")
+    (description
+     "This package provides tools for statistical analysis of assembled
+transcriptomes, including flexible differential expression analysis,
+visualization of transcript structures, and matching of assembled transcripts
+to annotation.")
+    (license license:artistic2.0)))
+
+(define-public r-megadepth
+  (package
+    (name "r-megadepth")
+    (version "1.2.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "megadepth" version))
+       (sha256
+        (base32
+         "0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg"))))
+    (properties `((upstream-name . "megadepth")))
+    (build-system r-build-system)
+    (inputs `(("megadepth" ,megadepth)))
+    (propagated-inputs
+     `(("r-cmdfun" ,r-cmdfun)
+       ("r-dplyr" ,r-dplyr)
+       ("r-fs" ,r-fs)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-magrittr" ,r-magrittr)
+       ("r-readr" ,r-readr)
+       ("r-xfun" ,r-xfun)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/LieberInstitute/megadepth")
+    (synopsis "BigWig and BAM related utilities")
+    (description
+     "This package provides an R interface to Megadepth.  It is particularly
+useful for computing the coverage of a set of genomic regions across bigWig or
+BAM files.  With this package, you can build base-pair coverage matrices for
+regions or annotations of your choice from BigWig files.")
+    (license license:artistic2.0)))
+
 (define-public r-tximeta
   (package
     (name "r-tximeta")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 430551887d..d91ff13b46 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -104,6 +104,7 @@
   #:use-module (gnu packages java)
   #:use-module (gnu packages java-compression)
   #:use-module (gnu packages jemalloc)
+  #:use-module (gnu packages jupyter)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages lisp-xyz)
   #:use-module (gnu packages logging)
@@ -4534,7 +4535,7 @@ The main functions of FastQC are:
 (define-public fastp
   (package
     (name "fastp")
-    (version "0.14.1")
+    (version "0.20.1")
     (source
      (origin
        (method git-fetch)
@@ -4544,19 +4545,18 @@ The main functions of FastQC are:
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1r6ms5zbf5rps4rgp4z73nczadl00b5rqylw8f684isfz27dp0xh"))))
+         "0ly8mxdvrcy23jwxyppysx3dhb1lwsqhfbgpyvargxhfk6k700x4"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; there are none
        #:make-flags
-       (list (string-append "BINDIR=" (assoc-ref %outputs "out") "/bin"))
+       (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
        #:phases
        (modify-phases %standard-phases
          (delete 'configure)
          (add-before 'install 'create-target-dir
            (lambda* (#:key outputs #:allow-other-keys)
-             (mkdir-p (string-append (assoc-ref outputs "out") "/bin"))
-             #t)))))
+             (mkdir-p (string-append (assoc-ref outputs "out") "/bin")))))))
     (inputs
      `(("zlib" ,zlib)))
     (home-page "https://github.com/OpenGene/fastp/")
@@ -10381,7 +10381,7 @@ once.  This package provides tools to perform Drop-seq analyses.")
 (define-public pigx-rnaseq
   (package
     (name "pigx-rnaseq")
-    (version "0.0.18")
+    (version "0.0.19")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@@ -10389,7 +10389,7 @@ once.  This package provides tools to perform Drop-seq analyses.")
                                   "/pigx_rnaseq-" version ".tar.gz"))
               (sha256
                (base32
-                "1622l6grmsk0wm859rvllngx29q3v16jjvzcdq2bmrlamccrj82y"))))
+                "1ja3bda1appxrzbfy7wp7khy30mm7lic8xbq3gkbpc5bld3as9cm"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-tests? #f             ; not supported
@@ -11387,38 +11387,53 @@ implementation differs in these ways:
 (define-public python-scanpy
   (package
     (name "python-scanpy")
-    (version "1.7.2")
+    (version "1.8.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "scanpy" version))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/theislab/scanpy")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "0c66adnfizsyk0h8bv2yhmay876z0klpxwpn4z6m71wly7yplpmd"))))
+         "0w1qmv3djqi8q0sn5hv34ivzs157fwjjb9nflfnagnhpxmw8vx5g"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (replace 'build
+           (lambda _
+             (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" ,version)
+             ;; ZIP does not support timestamps before 1980.
+             (setenv "SOURCE_DATE_EPOCH" "315532800")
+             (invoke "flit" "build")))
+         (replace 'install
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (add-installed-pythonpath inputs outputs)
+             (let ((out (assoc-ref outputs "out")))
+               (for-each (lambda (wheel)
+                           (format #true wheel)
+                           (invoke "python" "-m" "pip" "install"
+                                   wheel (string-append "--prefix=" out)))
+                         (find-files "dist" "\\.whl$")))))
          (replace 'check
            (lambda* (#:key inputs #:allow-other-keys)
              ;; These tests require Internet access.
              (delete-file-recursively "scanpy/tests/notebooks")
              (delete-file "scanpy/tests/test_clustering.py")
              (delete-file "scanpy/tests/test_datasets.py")
+             (delete-file "scanpy/tests/test_score_genes.py")
              (delete-file "scanpy/tests/test_highly_variable_genes.py")
 
              ;; TODO: I can't get the plotting tests to work, even with Xvfb.
-             (delete-file "scanpy/tests/test_plotting.py")
+             (delete-file "scanpy/tests/test_embedding_plots.py")
              (delete-file "scanpy/tests/test_preprocessing.py")
              (delete-file "scanpy/tests/test_read_10x.py")
 
-             ;; The following tests need anndata.tests, which aren't included
-             ;; in the final python-anndata package.
-             (delete-file "scanpy/tests/test_combat.py")
-             (delete-file "scanpy/tests/test_embedding_plots.py")
-             (delete-file "scanpy/tests/test_normalization.py")
-             (delete-file "scanpy/tests/test_pca.py")
-             (delete-file "scanpy/tests/external/test_scrublet.py")
+             ;; TODO: these fail with TypingError and "Use of unsupported
+             ;; NumPy function 'numpy.split'".
+             (delete-file "scanpy/tests/test_metrics.py")
 
              ;; The following tests requires 'scanorama', which isn't
              ;; packaged yet.
@@ -11426,8 +11441,24 @@ implementation differs in these ways:
 
              (setenv "PYTHONPATH"
                      (string-append (getcwd) ":"
+                                    (assoc-ref inputs "python-anndata:source") ":"
                                     (getenv "PYTHONPATH")))
-             (invoke "pytest"))))))
+             (invoke "pytest" "-vv"
+                     "-k"
+                     ;; Plot tests that fail.
+                     (string-append "not test_dotplot_matrixplot_stacked_violin"
+                                    " and not test_violin_without_raw"
+                                    " and not test_correlation"
+                                    " and not test_scatterplots"
+                                    " and not test_scatter_embedding_add_outline_vmin_vmax_norm"
+                                    " and not test_paga"
+                                    " and not test_paga_compare"
+
+                                    ;; These try to connect to the network
+                                    " and not test_plot_rank_genes_groups_gene_symbols"
+                                    " and not test_pca_chunked"
+                                    " and not test_pca_sparse"
+                                    " and not test_pca_reproducible")))))))
     (propagated-inputs
      `(("python-anndata" ,python-anndata)
        ("python-h5py" ,python-h5py)
@@ -11445,16 +11476,19 @@ implementation differs in these ways:
        ("python-scikit-learn" ,python-scikit-learn)
        ("python-scipy" ,python-scipy)
        ("python-seaborn" ,python-seaborn)
+       ("python-sinfo" ,python-sinfo)
        ("python-statsmodels" ,python-statsmodels)
        ("python-tables" ,python-tables)
        ("python-pytoml" ,python-pytoml)
        ("python-tqdm" ,python-tqdm)
        ("python-umap-learn" ,python-umap-learn)))
     (native-inputs
-     `(("python-leidenalg" ,python-leidenalg)
+     `(;; This package needs anndata.tests, which is not installed.
+       ("python-anndata:source" ,(package-source python-anndata))
+       ("python-flit" ,python-flit)
+       ("python-leidenalg" ,python-leidenalg)
        ("python-pytest" ,python-pytest)
-       ("python-setuptools-scm" ,python-setuptools-scm)
-       ("python-sinfo" ,python-sinfo)))
+       ("python-setuptools-scm" ,python-setuptools-scm)))
     (home-page "https://github.com/theislab/scanpy")
     (synopsis "Single-Cell Analysis in Python.")
     (description "Scanpy is a scalable toolkit for analyzing single-cell gene
@@ -14203,6 +14237,32 @@ sequencing (e.g. mapping or base/indel alignment uncertainty), which are
 usually ignored by other methods or only used for filtering.")
     (license license:expat)))
 
+(define-public ivar
+  (package
+    (name "ivar")
+    (version "1.3.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/andersen-lab/ivar")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "044xa0hm3b8fga64csrdx05ih8w7kwmvcdrdrhkg8j11ml4bi4xv"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("htslib" ,htslib)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)))
+    (home-page "https://andersen-lab.github.io/ivar/html/")
+    (synopsis "Tools for amplicon-based sequencing")
+    (description "iVar is a computational package that contains functions
+broadly useful for viral amplicon-based sequencing. ")
+    (license license:gpl3+)))
+
 (define-public python-pyliftover
   (package
     (name "python-pyliftover")
@@ -14678,6 +14738,263 @@ produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION
 instruments, or Pacific Biosciences RSII or Sequel sequencers.")
    (license license:expat)))
 
+(define-public python-strawc
+  (package
+    (name "python-strawc")
+    (version "0.0.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "strawC" version))
+       (sha256
+        (base32
+         "1z1gy8n56lhriy6hdkh9r82ndikndipq2cy2wh8q185qig4rimr6"))))
+    (build-system python-build-system)
+    (inputs
+     `(("curl" ,curl)
+       ("zlib" ,zlib)))
+    (propagated-inputs
+     `(("pybind11" ,pybind11)))
+    (home-page "https://github.com/aidenlab/straw")
+    (synopsis "Stream data from .hic files")
+    (description "Straw is library which allows rapid streaming of contact
+data from @file{.hic} files.  This package provides Python bindings.")
+    (license license:expat)))
+
+(define-public python-pybbi
+  (package
+    (name "python-pybbi")
+    (version "0.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pybbi" version))
+       (sha256
+        (base32
+         "1hvy2f28i2b41l1pq15vciqbj538n0lichp8yr6413jmgg06xdsk"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #false ; tests require network access
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'set-cc
+           (lambda _ (setenv "CC" "gcc")))
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (copy-recursively "tests" "/tmp/tests")
+               (with-directory-excursion "/tmp/tests"
+                 (invoke "python" "-m" "pytest" "-v"))))))))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("python-pkgconfig" ,python-pkgconfig)
+       ("python-pytest" ,python-pytest)))
+    (inputs
+     `(("libpng" ,libpng)
+       ("openssl" ,openssl)
+       ("zlib" ,zlib)))
+    (propagated-inputs
+     `(("python-cython" ,python-cython)
+       ("python-numpy" ,python-numpy)
+       ("python-pandas" ,python-pandas)
+       ("python-six" ,python-six)))
+    (home-page "https://github.com/nvictus/pybbi")
+    (synopsis "Python bindings to UCSC Big Binary file library")
+    (description
+     "This package provides Python bindings to the UCSC Big
+Binary (bigWig/bigBed) file library.  This provides read-level access to local
+and remote bigWig and bigBed files but no write capabilitites.  The main
+feature is fast retrieval of range queries into numpy arrays.")
+    (license license:expat)))
+
+(define-public python-dna-features-viewer
+  (package
+    (name "python-dna-features-viewer")
+    (version "3.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "dna_features_viewer" version))
+       (sha256
+        (base32
+         "0vci6kg2id6r6rh3cifq7ccnh7j0mb8iqg3hji6rva0ayrdqzafc"))))
+    (build-system python-build-system)
+    (arguments '(#:tests? #false)) ; there are none
+    (propagated-inputs
+     `(("python-biopython" ,python-biopython)
+       ("python-matplotlib" ,python-matplotlib)))
+    (home-page
+     "https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer")
+    (synopsis "Plot features from DNA sequences")
+    (description
+     "DNA Features Viewer is a Python library to visualize DNA features,
+e.g. from GenBank or Gff files, or Biopython SeqRecords.")
+    (license license:expat)))
+
+(define-public python-coolbox
+  (package
+    (name "python-coolbox")
+    (version "0.3.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "coolbox" version))
+       (sha256
+        (base32
+         "0gqp76285w9klswr47y6kxbzwhv033b26jfa179kccfhiaq5p2xa"))))
+    (build-system python-build-system)
+    (arguments '(#:tests? #false)) ; there are none
+    (inputs
+     `(("pybind11" ,pybind11)))
+    (propagated-inputs
+     `(("python-cooler" ,python-cooler)
+       ("python-dna-features-viewer" ,python-dna-features-viewer)
+       ("python-fire" ,python-fire)
+       ("python-h5py" ,python-h5py)
+       ("python-intervaltree" ,python-intervaltree)
+       ("python-ipywidgets" ,python-ipywidgets)
+       ("jupyter" ,jupyter)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-nbformat" ,python-nbformat)
+       ("python-numpy" ,python-numpy)
+       ("python-numpydoc" ,python-numpydoc)
+       ("python-pandas" ,python-pandas)
+       ("python-pybbi" ,python-pybbi)
+       ("python-pytest" ,python-pytest)
+       ("python-scipy" ,python-scipy)
+       ("python-statsmodels" ,python-statsmodels)
+       ("python-strawc" ,python-strawc)
+       ("python-svgutils" ,python-svgutils)
+       ("python-termcolor" ,python-termcolor)
+       ("python-voila" ,python-voila)))
+    (home-page "https://github.com/GangCaoLab/CoolBox")
+    (synopsis "Genomic data visualization toolkit")
+    (description
+     "CoolBox is a toolkit for visual analysis of genomics data.  It aims to
+be highly compatible with the Python ecosystem, easy to use and highly
+customizable with a well-designed user interface.  It can be used in various
+visualization situations, for example, to produce high-quality genome track
+plots or fetch common used genomic data files with a Python script or command
+line, interactively explore genomic data within Jupyter environment or web
+browser.")
+    (license license:gpl3+)))
+
+(define-public scregseg
+  (package
+    (name "scregseg")
+    (version "0.1.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/BIMSBbioinfo/scregseg")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1k8hllr5if6k2mm2zj391fv40sfc008cjm04l9vgfsdppb80i112"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #false                  ; tests require network access
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'do-not-fail-to-find-sklearn
+           (lambda _
+             ;; XXX: I have no idea why it cannot seem to find sklearn.
+             (substitute* "setup.py"
+               (("'sklearn',") "")))))))
+    (native-inputs
+     `(("python-cython" ,python-cython)))
+    (propagated-inputs
+     `(("python-scikit-learn" ,python-scikit-learn)
+       ("python-scipy" ,python-scipy)
+       ("python-numpy" ,python-numpy)
+       ("python-hmmlearn" ,python-hmmlearn)
+       ("python-pandas" ,python-pandas)
+       ("python-numba" ,python-numba)
+       ("python-anndata" ,python-anndata)
+       ("python-scanpy" ,python-scanpy)
+       ("python-pybedtools" ,python-pybedtools)
+       ("python-pysam" ,python-pysam)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-seaborn" ,python-seaborn)
+       ("python-coolbox" ,python-coolbox)))
+    (home-page "https://github.com/BIMSBbioinfo/scregseg")
+    (synopsis "Single-cell regulatory landscape segmentation")
+    (description "Scregseg (Single-Cell REGulatory landscape SEGmentation) is a
+tool that facilitates the analysis of single cell ATAC-seq data by an
+HMM-based segmentation algorithm.  Scregseg uses an HMM with
+Dirichlet-Multinomial emission probabilities to segment the genome either
+according to distinct relative cross-cell accessibility profiles or (after
+collapsing the single-cell tracks to pseudo-bulk tracks) to capture distinct
+cross-cluster accessibility profiles.")
+    (license license:gpl3+)))
+
+(define-public megadepth
+  (package
+    (name "megadepth")
+    (version "1.1.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/ChristopherWilks/megadepth")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0hj69d2dgmk2zwgazik7xzc04fxxlk93p888kpgc52fmhd95qph7"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #false ; some tests seem to require connection to
+                       ; www.ebi.ac.uk; this may be caused by htslib.
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'prepare-CMakeLists.txt
+           (lambda _
+             (rename-file "CMakeLists.txt.ci" "CMakeLists.txt")
+             (substitute* "CMakeLists.txt"
+               (("`cat ../VERSION`") ,version)
+               (("target_link_libraries\\(megadepth_static") "#")
+               (("target_link_libraries\\(megadepth_statlib") "#")
+               (("add_executable\\(megadepth_static") "#")
+               (("add_executable\\(megadepth_statlib") "#"))
+
+             (substitute* "tests/test.sh"
+               ;; Disable remote test
+               (("./megadepth http://stingray.cs.jhu.edu/data/temp/test.bam") "#")
+               ;; Prior to installation the binary's name differs from what
+               ;; the test script assumes.
+               (("./megadepth") "../build/megadepth_dynamic"))))
+         (replace 'check
+           (lambda* (#:key tests? #:allow-other-keys)
+             (when tests?
+               (with-directory-excursion "../source"
+                 (invoke "bash" "tests/test.sh" "use-local-test-data")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+               (mkdir-p bin)
+               (copy-file "megadepth_dynamic"
+                          (string-append bin "/megadepth"))))))))
+    (native-inputs
+     `(("diffutils" ,diffutils)
+       ("perl" ,perl)
+       ("grep" ,grep)))
+    (inputs
+     `(("curl" ,curl)
+       ("htslib" ,htslib)
+       ("libdeflate" ,libdeflate)
+       ("libbigwig" ,libbigwig)
+       ("zlib" ,zlib)))
+    (home-page "https://github.com/ChristopherWilks/megadepth")
+    (synopsis "BigWig and BAM/CRAM related utilities")
+    (description "Megadepth is an efficient tool for extracting coverage
+related information from RNA and DNA-seq BAM and BigWig files.  It supports
+reading whole-genome coverage from BAM files and writing either indexed TSV or
+BigWig files, as well as efficient region coverage summary over intervals from
+both types of files.")
+    (license license:expat)))
+
 (define-public r-ascat
   (package
    (name "r-ascat")
@@ -14737,6 +15054,34 @@ copy number estimation, as described by
 @url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
    (license license:gpl3)))
 
+(define-public r-catch
+  (let ((commit "196ddd5a51b1a5f5daa01de53fdaad9b7505e084")
+        (revision "1"))
+    (package
+      (name "r-catch")
+      (version (git-version "1.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/zhanyinx/CaTCH")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "11c7f1fc8f57wnwk1hrgr5y814m80zj8gkz5021vxyxy2v02cqgd"))))
+      (build-system r-build-system)
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'chdir
+             (lambda _ (chdir "CaTCH"))))))
+      (home-page "https://github.com/zhanyinx/CaTCH_R")
+      (synopsis "Call a hierarchy of domains based on Hi-C data")
+      (description "This package allows building the hierarchy of domains
+starting from Hi-C data.  Each hierarchical level is identified by a minimum
+value of physical insulation between neighboring domains.")
+      (license license:gpl2+))))
+
 (define-public r-spectre
   (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a")
         (revision "1"))
@@ -14808,3 +15153,42 @@ copy number estimation, as described by
 integration, exploration, and analysis of high-dimensional single-cell
 cytometry and imaging data.")
       (license license:expat))))
+
+(define-public r-cytonorm
+  (let ((commit "e4b9d343ee65db3c422800f1db3e77c25abde987")
+        (revision "1"))
+    (package
+      (name "r-cytonorm")
+      (version (git-version "0.0.7" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/saeyslab/CytoNorm")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0h2rdy15i4zymd4dv60n5w0frbsdbmzpv99dgm0l2dn041qv7fah"))))
+      (properties `((upstream-name . "CytoNorm")))
+      (build-system r-build-system)
+      (propagated-inputs
+       `(("r-cytoml" ,r-cytoml)
+         ("r-dplyr" ,r-dplyr)
+         ("r-emdist" ,r-emdist)
+         ("r-flowcore" ,r-flowcore)
+         ("r-flowsom" ,r-flowsom)
+         ("r-flowworkspace" ,r-flowworkspace)
+         ("r-ggplot2" ,r-ggplot2)
+         ("r-gridextra" ,r-gridextra)
+         ("r-pheatmap" ,r-pheatmap)
+         ("r-stringr" ,r-stringr)))
+      (home-page "https://github.com/saeyslab/CytoNorm")
+      (synopsis "Normalize cytometry data measured across multiple batches")
+      (description
+       "This package can be used to normalize cytometry samples when a control
+sample is taken along in each of the batches.  This is done by first
+identifying multiple clusters/cell types, learning the batch effects from the
+control samples and applying quantile normalization on all markers of
+interest.")
+      (license license:gpl2+))))
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index e75c37b0f8..8708bc6839 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -801,7 +801,34 @@ it fits within common partitioning schemes.")
   (make-u-boot-package "A20-OLinuXino_MICRO" "arm-linux-gnueabihf"))
 
 (define-public u-boot-nintendo-nes-classic-edition
-  (make-u-boot-package "Nintendo_NES_Classic_Edition" "arm-linux-gnueabihf"))
+  (let ((base (make-u-boot-package "Nintendo_NES_Classic_Edition"
+                                   "arm-linux-gnueabihf")))
+    (package
+      (inherit base)
+      ;; Starting with 2019.01, FEL doesn't work anymore on A33.
+      (version "2018.11")
+      (source (origin
+                (method url-fetch)
+                (uri (string-append
+                      "https://ftp.denx.de/pub/u-boot/"
+                      "u-boot-" version ".tar.bz2"))
+                (sha256
+                 (base32
+                  "0znkwljfwwn4y7j20pzz4ilqw8znphrfxns0x1lwdzh3xbr96z3k"))
+                (patches (search-patches
+                           "u-boot-nintendo-nes-serial.patch"))))
+      (description "U-Boot is a bootloader used mostly for ARM boards.  It
+also initializes the boards (RAM etc).
+
+This version is for the Nintendo NES Classic Edition.  It is assumed that
+you have added a serial port to pins PB0 and PB1 as described on
+@url{https://linux-sunxi.org/Nintendo_NES_Classic_Edition}.
+
+In order to use FEL mode on the device, hold the Reset button on the
+device while it's being turned on (and a while longer).")
+      (native-inputs
+       `(("python" ,python-2)
+         ,@(package-native-inputs base))))))
 
 (define-public u-boot-wandboard
   (make-u-boot-package "wandboard" "arm-linux-gnueabihf"))
diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm
index c05a5eac0a..a5ef2fff62 100644
--- a/gnu/packages/calendar.scm
+++ b/gnu/packages/calendar.scm
@@ -180,13 +180,13 @@ data units.")
 (define-public khal
   (package
     (name "khal")
-    (version "0.10.3")
+    (version "0.10.4")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "khal" version))
               (sha256
                (base32
-                "0cm4xn871w3i99l3qmhv0bnv8q6rd1w3rip9sskyb5z59z0qzp9g"))))
+                "17qj1n2l39pnzk4vjrmql90z7908nivnzcc2g9nj1h31k859inrz"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ; The test suite is unreliable. See <https://bugs.gnu.org/44197>
diff --git a/gnu/packages/ccache.scm b/gnu/packages/ccache.scm
index 4ff0fb2ae0..77098658cf 100644
--- a/gnu/packages/ccache.scm
+++ b/gnu/packages/ccache.scm
@@ -31,21 +31,26 @@
 (define-public ccache
   (package
     (name "ccache")
-    (version "4.3")
+    (version "4.4")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/ccache/ccache/releases/download/v"
                            version "/ccache-" version ".tar.xz"))
        (sha256
-        (base32 "1d4995lkmqshzfxlmbyn101m1rxs02yb8dgh4rl30p26hhhhyjjh"))))
+        (base32 "0qbmcs6c3m071vsd1ppa31r8s0dzpaw5y38z8ga1bz48rwpfl2xl"))))
     (build-system cmake-build-system)
     (native-inputs `(("perl" ,perl)     ; for test/run
                      ("which" ,(@ (gnu packages base) which))))
     (inputs `(("zlib" ,zlib)
               ("zstd" ,zstd "lib")))
     (arguments
-     '(#:phases
+     '(;; Disable redis backend explicitly. Build system insists on present dependency
+       ;; or on explicit flag.
+       #:configure-flags
+       '("-DREDIS_STORAGE_BACKEND=OFF")
+
+       #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'setup-tests
            (lambda _
@@ -56,7 +61,7 @@
            ;; Tests require a writable HOME.
            (lambda _
              (setenv "HOME" (getenv "TMPDIR"))
-	     #t)))))
+             #t)))))
     (home-page "https://ccache.dev/")
     (synopsis "Compiler cache")
     (description
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 7054db5ef7..7b08f55e21 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -9,7 +9,7 @@
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2016, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
-;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
+;;; Copyright © 2016 Christine Lemmer-Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym+a@scratchpost.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
@@ -866,7 +866,8 @@ doctest.")
     (description
      "Mock is a library for testing in Python.  It allows you to replace parts
 of your system under test with mock objects and make assertions about how they
-have been used.")
+have been used.  This library is now part of Python (since Python 3.3),
+available via the @code{unittest.mock} module.")
     (properties `((python2-variant . ,(delay python2-mock))))
     (license license:expat)))
 
@@ -1022,6 +1023,8 @@ and many external plugins.")
     (license license:expat)
     (properties `((python2-variant . ,(delay python2-pytest))))))
 
+(define-public python-pytest-6 python-pytest)
+
 ;; Pytest 4.x are the last versions that support Python 2.
 (define-public python2-pytest
   (package
@@ -1237,19 +1240,33 @@ contacting the real http server.")
 (define-public python-pytest-mock
   (package
     (name "python-pytest-mock")
-    (version "1.10.1")
+    (version "3.6.1")
     (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "pytest-mock" version))
-        (sha256
-         (base32
-          "1i5mg3ff1qk0wqfcxfz60hwy3q5dskdp36i10ckigkzffg8hc3ad"))))
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest-mock" version))
+       (sha256 (base32
+                "0qhfmd05z3g88bnwq6644jl6p5wy01i4yy7h8883z9jjih2pl8a0"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               ;; Skip the assertion rewriting tests, which don't work in the
+               ;; presence of read-only Python modules (a limitation of
+               ;; Pytest).  Also skip the "test_standalone_mock" test, which
+               ;; can only work when 'python-mock' is not available
+               ;; (currently propagated by Pytest 5).
+               (invoke "pytest" "--assert=plain"
+                       "-k" "not test_standalone_mock")))))))
     (native-inputs
      `(("python-setuptools-scm" ,python-setuptools-scm)))
     (propagated-inputs
-     `(("python-pytest" ,python-pytest)))
+     `(("python-pytest" ,python-pytest)
+       ("python-pytest-asyncio" ,python-pytest-asyncio)))
     (home-page "https://github.com/pytest-dev/pytest-mock/")
     (synopsis "Thin-wrapper around the mock package for easier use with py.test")
     (description
@@ -1299,9 +1316,11 @@ same arguments.")
              (substitute* "setup.py"
                (("pytest>=6\\.0\\.0") "pytest"))))
          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "py.test" "-v")))))))
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "pytest" "-vv"
+                       "-n" (number->string (parallel-job-count)))))))))
     (native-inputs
      `(("python-setuptools-scm" ,python-setuptools-scm)))
     (propagated-inputs
@@ -1325,17 +1344,33 @@ result back.")
 (define-public python2-pytest-xdist
   (package-with-python2 python-pytest-xdist))
 
+(define-public python-pytest-xdist-next
+  (package/inherit python-pytest-xdist
+    (name "python-pytest-xdist")
+    (version "2.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest-xdist" version))
+       (sha256
+        (base32
+         "19cy57jrf3pwi7x6fnbxryjvqagsl0yv736jnynvr3yqhlpxxv78"))))
+    (propagated-inputs
+     `(("python-execnet" ,python-execnet)
+       ("python-pytest" ,python-pytest-6)
+       ("python-pytest-forked" ,python-pytest-forked)))))
+
 (define-public python-pytest-timeout
   (package
     (name "python-pytest-timeout")
-    (version "1.3.4")
+    (version "1.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-timeout" version))
        (sha256
         (base32
-         "13n42azbvs5slvy2n1a9nw17r4qdq10dd68nln3jp925safa3yl0"))))
+         "0xnsigs0kmpq1za0d4i522sp3f71x5bgpdh3ski0rs74yqy13cr0"))))
     (build-system python-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases
@@ -1345,7 +1380,8 @@ result back.")
                       (add-installed-pythonpath inputs outputs)
                       (invoke "pytest" "-vv"))))))
     (propagated-inputs
-     `(("python-pytest" ,python-pytest)))
+     `(("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)))
     (native-inputs
      `(("python-pexpect" ,python-pexpect)))
     (home-page "https://github.com/pytest-dev/pytest-timeout")
@@ -1361,22 +1397,42 @@ timeout has been exceeded.")
     (version "1.3.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "pytest-forked" version))
+       (method git-fetch)               ;for tests
+       (uri (git-reference
+             (url "https://github.com/pytest-dev/pytest-forked")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "1jip9qh115zcg1rn7irqx5qycb9k248d5imy86f566md01zaraba"))))
+         "1aip4kx50ynvykl7kq2mlbsi82vx701dvb8mm64lhp69bbv105rc"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-setuptools-scm
+           (lambda _
+             (substitute* "setup.py"
+               (("use_scm_version=True")
+                (format #f "version=~s" ,version))
+               (("setup_requires=\\['setuptools_scm'\\],.*")
+                ""))))
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "pytest" "-vv")))))))
     (native-inputs
-     `(("python-pytest" ,python-pytest)
-       ("python-setuptools-scm" ,python-setuptools-scm)))
-    (home-page
-     "https://github.com/pytest-dev/pytest-forked")
-    (synopsis
-     "Run tests in isolated forked subprocesses")
-    (description
-     "Pytest plugin which will run each test in a subprocess and will report if
-a test crashed the process.")
+     ;; XXX: The bootstrap variant of Pytest is used to ensure the
+     ;; 'hypothesis' plugin is not in the environment (due to
+     ;; <http://issues.guix.gnu.org/25235>), which would cause the test suite
+     ;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54).
+     `(("python-pytest" ,python-pytest-bootstrap)))
+    (home-page "https://github.com/pytest-dev/pytest-forked")
+    (synopsis "Pytest plugin to run tests in isolated forked subprocesses")
+    (description "This package provides a Pytest plugin which enables running
+each test in a subprocess and will report if a test crashed the process.  It
+can be useful to isolate tests against undesirable global environment
+side-effects (such as setting environment variables).")
     (license license:expat)))
 
 (define-public python-scripttest
@@ -1694,10 +1750,13 @@ executed.")
     (version "0.15.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "pytest-asyncio" version))
+       (method git-fetch)               ;for tests
+       (uri (git-reference
+             (url "https://github.com/pytest-dev/pytest-asyncio")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0vrzsrg3j1cfd57m0b3r5xf87rslgcs42jya346mdg9bc6wwwr15"))))
+        (base32 "03drs4myv1ik79148xyhli37q6mp931jb14cz65n8qvls2zvvwgx"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-coverage" ,python-coverage)
@@ -1897,11 +1956,11 @@ framework which enables you to test server connections locally.")
               (base32
                "0rm2rchrr63imn44xk5slwydxf8gvy579524qcxq7dc42pnk17zx"))))
     (build-system python-build-system)
+    (native-inputs
+     `(("python-setuptools-scm" ,python-setuptools-scm)))
     (propagated-inputs
      `(("python-pytest" ,python-pytest)
        ("python-psutil" ,python-psutil)))
-    (native-inputs
-     `(("python-setuptools-scm" ,python-setuptools-scm)))
     (synopsis "Pytest plugin to manage external processes across test runs")
     (description "Pytest-xprocess is an experimental py.test plugin for managing
 processes across test runs.")
diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm
index f8d3c5acb3..2b018d95f6 100644
--- a/gnu/packages/chromium.scm
+++ b/gnu/packages/chromium.scm
@@ -324,11 +324,11 @@
                   (string-append "ungoogled-chromium-" category "-" name))))
     (sha256 (base32 hash))))
 
-(define %chromium-version "92.0.4515.131")
+(define %chromium-version "92.0.4515.159")
 (define %debian-revision "debian/90.0.4430.85-1")
 ;; Note: use 'git describe --long' even for exact tags to placate the
 ;; custom version format for ungoogled-chromium.
-(define %ungoogled-revision "92.0.4515.131-1-0-g4a9534c")
+(define %ungoogled-revision "92.0.4515.159-1-8-g8164c91")
 
 (define %debian-patches
   (list (debian-patch "fixes/nomerge.patch"
@@ -348,7 +348,7 @@
     (file-name (git-file-name "ungoogled-chromium" %ungoogled-revision))
     (sha256
      (base32
-      "1nbgknj5ba116y47sxbp7pbma1bp0lmkyi3vk915x837ysaf6mrd"))))
+      "0wbcbjzh5ak4nciahqw4yvxc4x8ik4x0iz9h4kfy0m011sxzy174"))))
 
 (define %guix-patches
   (list (local-file
@@ -484,7 +484,7 @@
                                   %chromium-version ".tar.xz"))
               (sha256
                (base32
-                "0fnfyh61w6dmavvfbf2x1zzrby0xpx4jd4ifjsgyc39rsl789b5n"))
+                "04gxgimg5ygzx6nvfws5y9dppdfjg1fhyl8zbykmksbh1myk6zfr"))
               (modules '((guix build utils)))
               (snippet (force ungoogled-chromium-snippet))))
     (build-system gnu-build-system)
diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm
index 3a2e6df207..d5e36013ea 100644
--- a/gnu/packages/ci.scm
+++ b/gnu/packages/ci.scm
@@ -73,8 +73,8 @@
                 (file-name (string-append name "-" version "-checkout")))))))
 
 (define-public cuirass
-  (let ((commit "f9a5dbd54eaa7fa8ac173fd5e68209f937840d90")
-        (revision "1"))
+  (let ((commit "91e8b2ec2c2dbb87089b0c98a29bba427ba7b7bb")
+        (revision "3"))
     (package
       (name "cuirass")
       (version (git-version "1.1.0" revision commit))
@@ -87,7 +87,7 @@
          (file-name (git-file-name name version))
          (sha256
           (base32
-           "0wrx2bf1gdnbkfgmmqr46s1fhvv3568yi7hxb24plf4xx5jq5yg8"))))
+           "00xkxvghfgnmbs182s0q67habxjkv9sh7q8acsiy66m0z4f57y39"))))
       (build-system gnu-build-system)
       (arguments
        `(#:modules ((guix build utils)
diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm
index d52621dfcb..b9267b0f21 100644
--- a/gnu/packages/code.scm
+++ b/gnu/packages/code.scm
@@ -64,6 +64,7 @@
   #:use-module (gnu packages perl-compression)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages texinfo)
@@ -137,17 +138,26 @@ highlighting your own code that seemed comprehensible when you wrote it.")
               (base32
                "0g4aslm2zajq605py11s4rs1wdnzcqhkh7bc2xl5az42adzzg839"))))
     (build-system gnu-build-system)
-    (inputs `(("coreutils" ,coreutils)
-              ("ncurses" ,ncurses)
-              ("libltdl" ,libltdl)
-              ("sqlite" ,sqlite)
-              ("python-wrapper" ,python-wrapper)))
+    (inputs
+      `(("bash" ,bash-minimal)                    ; for wrap-program
+        ("coreutils" ,coreutils)
+        ("ctags" ,universal-ctags)
+        ("libltdl" ,libltdl)
+        ("ncurses" ,ncurses)
+        ("python-pygments" ,python-pygments)
+        ("python-wrapper" ,python-wrapper)
+        ("sqlite" ,sqlite)))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-ncurses="
                             (assoc-ref %build-inputs "ncurses"))
              (string-append "--with-sqlite3="
                             (assoc-ref %build-inputs "sqlite"))
+             (string-append "--with-universal-ctags="
+                            (assoc-ref %build-inputs "ctags") "/bin/ctags")
+             (string-append "--sysconfdir="
+                            (assoc-ref %outputs "out") "/share/gtags")
+             "--localstatedir=/var"         ; This needs to be a writable location.
              "--disable-static")
 
        #:phases
@@ -158,6 +168,20 @@ highlighting your own code that seemed comprehensible when you wrote it.")
                            (assoc-ref inputs "coreutils") "/bin/echo")))
                (substitute* "globash/globash.in"
                  (("/bin/echo") echo)))))
+         (add-after 'post-install 'install-plugins
+           (lambda _
+             (with-directory-excursion "plugin-factory"
+               (invoke "make" "install"))))
+         (add-before 'install 'dont-install-to-/var
+           (lambda _
+             (substitute* "gozilla/Makefile"
+               (("DESTDIR\\)\\$\\{localstatedir\\}") "TMPDIR)"))))
+         (add-after 'install-plugins 'wrap-program
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (wrap-program
+               (string-append (assoc-ref outputs "out")
+                              "/share/gtags/script/pygments_parser.py")
+               `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))))))
         (add-after 'install 'post-install
           (lambda* (#:key outputs #:allow-other-keys)
             ;; Install the plugin files in the right place.
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 93d517abd5..026d448ce1 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -2581,6 +2581,42 @@ with their error correction data losslessly rearranged for better compression,
 to their original, binary CD format.")
     (license license:gpl3+)))
 
+(define-public libdeflate
+  (package
+    (name "libdeflate")
+    (version "1.8")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/ebiggers/libdeflate")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0nw1zhr2s6ffcc3s0n5wsshvjb6pmybwapagli135zzn2fx1pdiz"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list (string-append "CC=" ,(cc-for-target))
+             (string-append "PREFIX=" (assoc-ref %outputs "out")))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure))))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "https://github.com/ebiggers/libdeflate")
+    (synopsis "Library for DEFLATE/zlib/gzip compression and decompression")
+    (description "Libdeflate is a library for fast, whole-buffer DEFLATE-based
+compression and decompression.  The supported formats are:
+
+@enumerate
+@item DEFLATE (raw)
+@item zlib (a.k.a. DEFLATE with a zlib wrapper)
+@item gzip (a.k.a. DEFLATE with a gzip wrapper)
+@end enumerate
+")
+    (license license:expat)))
+
 (define-public tarlz
   (package
     (name "tarlz")
diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm
index af10d1186f..45a02b5735 100644
--- a/gnu/packages/cpp.scm
+++ b/gnu/packages/cpp.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com>
 ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
-;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2018, 2021 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2019, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
 ;;; Copyright © 2019 Jan Wielkiewicz <tona_kosmicznego_smiecia@interia.pl>
@@ -19,7 +19,7 @@
 ;;; Copyright © 2020 Milkey Mouse <milkeymouse@meme.institute>
 ;;; Copyright © 2021 Raghav Gururajan <rg@raghavgururajan.name>
 ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
-
+;;; Copyright © 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -46,6 +46,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system python)
   #:use-module (guix modules)
+  #:use-module (guix gexp)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages boost)
@@ -66,6 +67,7 @@
   #:use-module (gnu packages maths)
   #:use-module (gnu packages onc-rpc)
   #:use-module (gnu packages perl)
+  #:use-module (gnu packages python)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages popt)
   #:use-module (gnu packages pretty-print)
@@ -557,6 +559,66 @@ tools:
 @end itemize\n")
     (license license:bsd-3)))
 
+(define-public cpp-httplib
+  ;; this package is not graftable, as everything is implemented in a single
+  ;; header
+  (package
+    (name "cpp-httplib")
+    (version "0.8.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/yhirose/cpp-httplib")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32 "0c0gyfbvm34bgrqy9fhfxw1f8nb9zhf063j7xq91k892flb7qm1c"))
+       (file-name (git-file-name name version))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:configure-flags
+       '("-DBUILD_SHARED_LIBS=ON"
+         "-DHTTPLIB_COMPILE=ON"
+         "-DHTTPLIB_REQUIRE_BROTLI=ON"
+         "-DHTTPLIB_REQUIRE_OPENSSL=ON"
+         "-DHTTPLIB_REQUIRE_ZLIB=ON")
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-network-tests
+           (lambda _
+             (for-each
+              (lambda (test)
+                (substitute* "test/test.cc"
+                  (((string-append "\\(" test))
+                   (string-append "(DISABLED_" test))))
+              ;; There are tests requiring network access, disable them
+              '("AbsoluteRedirectTest" "BaseAuthTest" "CancelTest"
+                "ChunkedEncodingTest" "ChunkedEncodingTest"
+                "DecodeWithChunkedEncoding" "DefaultHeadersTest"
+                "DigestAuthTest" "HttpsToHttpRedirectTest"
+                "RangeTest" "RedirectTest" "RelativeRedirectTest"
+                "SSLClientTest" "SendAPI" "TooManyRedirectTest" "UrlWithSpace"
+                "YahooRedirectTest" "YahooRedirectTest"))))
+         (replace 'check
+           (lambda* (#:key source tests? #:allow-other-keys)
+             ;; openssl genrsa wants to write a file in the git checkout
+             (when tests?
+               (with-directory-excursion "../source/test"
+                 (invoke "make"))))))))
+    (native-inputs
+     ;; required to build shared lib
+     `(("python" ,python)))
+    (inputs
+     `(("brotli" ,brotli)
+       ("openssl" ,openssl)
+       ("zlib" ,zlib)))
+    (home-page "https://github.com/yhirose/cpp-httplib")
+    (synopsis "C++ HTTP/HTTPS server and client library")
+    (description "cpp-httplib is a C++11 single-file cross platform blocking
+HTTP/HTTPS library, easy to setup.  It can also be used as a single-header
+library.")
+    (license license:expat)))
+
 (define-public cpplint
   (package
     (name "cpplint")
@@ -1213,3 +1275,41 @@ of reading and writing XML.")
     ;; incompatible with the GPL v2.  Refer to the file named FLOSSE for the
     ;; details.
     (license license:gpl2+)))
+
+(define-public jsonnet
+  (package
+    (name "jsonnet")
+    (version "0.17.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/google/jsonnet")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1ddz14699v5lqx3dh0mb7hfffr6fk5zhmzn3z8yxkqqvriqnciim"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (rename-file "third_party/md5" ".md5")
+            (delete-file-recursively "third_party")
+            (delete-file-recursively "doc/third_party")
+            (substitute* '("core/vm.cpp")
+              (("#include \"json.hpp\"") "#include <nlohmann/json.hpp>"))
+            (mkdir "third_party")
+            (rename-file ".md5" "third_party/md5")))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:configure-flags '("-DUSE_SYSTEM_GTEST=ON" "-DUSE_SYSTEM_JSON=ON"
+                           "-DBUILD_STATIC_LIBS=OFF")))
+    (native-inputs
+     `(("googletest" ,googletest)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("json-modern-cxx" ,json-modern-cxx)))
+    (home-page "https://jsonnet.org/")
+    (synopsis "Data templating language")
+    (description "Jsonnet is a templating language extending JSON
+syntax with variables, conditions, functions and more.")
+    (license license:asl2.0)))
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 872d8d6f1a..0750c7d507 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -134,14 +134,14 @@ files and provide more explicit control over line endings.")
 (define-public r-cachem
   (package
     (name "r-cachem")
-    (version "1.0.5")
+    (version "1.0.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cachem" version))
        (sha256
         (base32
-         "1xigqfhkl4n768bjgn2bqvb9k70h1ibj4lv5vvpwsh1p6vw4mkw2"))))
+         "0r0q5w8lsxak46crnkbi739qzys90hlw7cqqqhv99xzkpkvm554s"))))
     (properties `((upstream-name . "cachem")))
     (build-system r-build-system)
     (propagated-inputs
@@ -187,18 +187,20 @@ etc.")
 (define-public r-datawizard
   (package
     (name "r-datawizard")
-    (version "0.1.0")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "datawizard" version))
        (sha256
         (base32
-         "1fc27arvm6ks65kl9nrl2vnprpz7j8d0r2yassgxnnvr3p3ba043"))))
+         "1brbkjl0ds3gd0x6jl6vggzl1nfrn76z63vhj2gbl9l168iss5z3"))))
     (properties `((upstream-name . "datawizard")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-insight" ,r-insight)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://easystats.github.io/datawizard/")
     (synopsis "Easy data wrangling")
     (description
@@ -229,6 +231,26 @@ wrangling backend for the packages in the @code{easystats} ecosystem.")
 visualization of their differences.")
     (license license:gpl2+)))
 
+(define-public r-emdist
+  (package
+    (name "r-emdist")
+    (version "0.3-1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "emdist" version))
+       (sha256
+        (base32
+         "1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"))))
+    (properties `((upstream-name . "emdist")))
+    (build-system r-build-system)
+    (home-page "http://www.rforge.net/emd")
+    (synopsis "Earth mover's distance")
+    (description
+     "This package provides tools to calculate the Earth Mover's
+Distance (EMD).")
+    (license license:expat)))
+
 (define-public r-googledrive
   (package
     (name "r-googledrive")
@@ -638,13 +660,13 @@ variables.")
 (define-public r-ggpmisc
   (package
     (name "r-ggpmisc")
-    (version "0.4.2")
+    (version "0.4.2-1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "ggpmisc" version))
               (sha256
                (base32
-                "0ma0xcwjgj0sp9483s2y62ylv992dqjxqfgb3zl8f1pksypqdbac"))))
+                "1jkxcmpxq3b5ng276adph25s5w9imjxr1lqasqw50d2kcdhq58cy"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
@@ -1195,14 +1217,14 @@ package is a port of the Python package @code{cssselect}.")
 (define-public r-reprex
   (package
     (name "r-reprex")
-    (version "2.0.0")
+    (version "2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "reprex" version))
        (sha256
         (base32
-         "1lcnxczy28n4g3rvph09va7svcznfyqa7zdggklqb924qvy7flwh"))))
+         "09k4rasp7mz6n796dsklcbc5l7prljiznrm7fra16qybr9kqcv8f"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-callr" ,r-callr)
@@ -1424,23 +1446,21 @@ Zucchini.")
 (define-public r-httpuv
   (package
     (name "r-httpuv")
-    (version "1.6.1")
+    (version "1.6.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "httpuv" version))
               (sha256
                (base32
-                "0rxy57zl8yb5amsn3pvikha04k2vk0py4gys09lc7wr3agamswva"))
+                "1p5savhrcqlagnnh8ccnhpypbif9jhp97nq4rnhldn98gmb4a7sn"))
               ;; Unvendor bundled libraries. As of 1.5.4 the vendored libuv
               ;; only contains fixes for building on Solaris.
               (patches (search-patches "r-httpuv-1.5.5-unvendor-libuv.patch"))
               (modules '((guix build utils)))
+              ;; Cannot unbundle http-parser, because it contains local
+              ;; modifications.
               (snippet
-               `(begin
-                  (delete-file-recursively "src/libuv")
-                  ;; Cannot unbundle http-parser, because it contains local
-                  ;; modifications.
-                  #t))))
+               '(delete-file-recursively "src/libuv"))))
     (build-system r-build-system)
     (arguments
      `(#:phases
@@ -1453,10 +1473,10 @@ Zucchini.")
              ;; Fix https://github.com/rstudio/httpuv/issues/282
              (substitute* "src/http.cpp"
                (("uv_pipe_init\\(pLoop, &pSocket->handle\\.pipe, true\\);")
-                "uv_pipe_init(pLoop, &pSocket->handle.pipe, 0);"))
-             #t)))))
+                "uv_pipe_init(pLoop, &pSocket->handle.pipe, 0);")))))))
     (inputs
-     `(("libuv" ,libuv)))
+     `(("libuv" ,libuv)
+       ("zlib" ,zlib)))
     (propagated-inputs
      `(("r-later" ,r-later)
        ("r-promises" ,r-promises)
@@ -1503,13 +1523,13 @@ in systems and applications.")
 (define-public r-servr
   (package
     (name "r-servr")
-    (version "0.22")
+    (version "0.23")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "servr" version))
               (sha256
                (base32
-                "1vnlkbf8s55rfgz7qp2dd84pf9zw94qmdx25rl6i7jybhsxmb71h"))))
+                "1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-httpuv" ,r-httpuv)
@@ -2261,14 +2281,14 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
 (define-public r-d3r
   (package
     (name "r-d3r")
-    (version "0.9.1")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "d3r" version))
        (sha256
         (base32
-         "0kc82vvyfxhxvqfalngn36prn3sxdiinsx04rn99ha6zdc27zp5k"))))
+         "1qijkllfaaw0lb29j8mappm8jz9kg8gkihxq5wqhb4gabsazdwva"))))
     (build-system r-build-system)
     (arguments
      `(#:modules ((guix build utils)
@@ -2289,7 +2309,9 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
                         (,(assoc-ref inputs "d3.v5.js")
                          "v5/dist/d3.min.js")
                         (,(assoc-ref inputs "d3.v6.js")
-                         "v6/dist/d3.min.js"))))
+                         "v6/dist/d3.min.js")
+                        (,(assoc-ref inputs "d3.v7.js")
+                         "v7/dist/d3.min.js"))))
                  (lambda (sources targets)
                    (for-each (lambda (source target)
                                (format #t "Processing ~a --> ~a~%"
@@ -2297,8 +2319,7 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
                                (delete-file target)
                                (invoke "esbuild" source "--minify"
                                        (string-append "--outfile=" target)))
-                             sources targets))))
-             #t)))))
+                             sources targets)))))))))
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
        ("r-htmltools" ,r-htmltools)
@@ -2333,7 +2354,14 @@ Bootstrap themes, which are packaged for use with Shiny applications.")
            (uri "https://d3js.org/d3.v6.js")
            (sha256
             (base32
-             "1x6432ca7p1pfxhz3airzw943fincn9izzxkclc1wmphcvv2n2p9"))))))
+             "1x6432ca7p1pfxhz3airzw943fincn9izzxkclc1wmphcvv2n2p9"))))
+       ("d3.v7.js"
+        ,(origin
+           (method url-fetch)
+           (uri "https://d3js.org/d3.v7.js")
+           (sha256
+            (base32
+             "0sd6vavxs8mx5xyb8xahlqghdiczqd284a7d5wravhqnrj0bw097"))))))
     (home-page "https://github.com/timelyportfolio/d3r")
     (synopsis "d3.js utilities for R")
     (description
@@ -4029,14 +4057,14 @@ matrices, a special case of sparse matrices.")
 (define-public r-bbmle
   (package
     (name "r-bbmle")
-    (version "1.0.23.1")
+    (version "1.0.24")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bbmle" version))
        (sha256
         (base32
-         "0p3l9shbr2846qmw8n0fyzf4j7gmi08aypl82jml3dwh26q1whk0"))))
+         "1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bdsmatrix" ,r-bdsmatrix)
@@ -4045,6 +4073,8 @@ matrices, a special case of sparse matrices.")
        ("r-matrix" ,r-matrix)
        ("r-mvtnorm" ,r-mvtnorm)
        ("r-numderiv" ,r-numderiv)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://cran.r-project.org/web/packages/bbmle")
     (synopsis "Tools for General Maximum Likelihood Estimation")
     (description
@@ -5737,13 +5767,13 @@ iVAT).")
 (define-public r-xfun
   (package
     (name "r-xfun")
-    (version "0.24")
+    (version "0.25")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xfun" version))
        (sha256
-        (base32 "10xmw82wk40kjx22slla7959993l80s9m2rsvvvb8v9g42armqz3"))))
+        (base32 "15xy6hpz35j3mn4gvllj5m6krh5d86l4rnlxazsqjlckr237qgg6"))))
     (build-system r-build-system)
     ;; knitr itself depends on xfun
     #;
@@ -5910,14 +5940,14 @@ packages that work with genomic data.")
 (define-public r-tinytex
   (package
     (name "r-tinytex")
-    (version "0.32")
+    (version "0.33")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tinytex" version))
        (sha256
         (base32
-         "17y20kb5xgmz77n4rrkqmcm0cnjwfi4mn84h6zabij76b8cjiykh"))))
+         "10lqn704dqv5k5v6y964l8c77rwy4ilrc1hcb99j4vxpx3p4nd43"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-xfun" ,r-xfun)))
@@ -7437,14 +7467,14 @@ exchanging spatial objects with other R packages.")
 (define-public r-later
   (package
     (name "r-later")
-    (version "1.2.0")
+    (version "1.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "later" version))
        (sha256
         (base32
-         "00f4n1b2ykrs2cd61pypa4d00ydx9hqq2c1a1p8psa2yym6979bm"))))
+         "0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rcpp" ,r-rcpp)
@@ -7562,22 +7592,20 @@ it.")
 (define-public r-rgexf
   (package
     (name "r-rgexf")
-    (version "0.16.0")
+    (version "0.16.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rgexf" version))
        (sha256
         (base32
-         "1vj5ha1qx0xzflchxf25ycys6clfn9y32m1717afzkvhmkwisrra"))
+         "00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"))
+       ;; Delete minified JavaScript files
        (snippet
-        '(begin
-           ;; Delete minified JavaScript files
-           (for-each delete-file
-                     '("inst/gexf-js/js/jquery-2.0.2.min.js"
-                       "inst/gexf-js/js/jquery-ui-1.10.3.custom.min.js"
-                       "inst/gexf-js/js/jquery.mousewheel.min.js"))
-           #true))))
+        '(for-each delete-file
+                   '("inst/gexf-js/js/jquery-2.0.2.min.js"
+                     "inst/gexf-js/js/jquery-ui-1.10.3.custom.min.js"
+                     "inst/gexf-js/js/jquery.mousewheel.min.js")))))
     (properties `((upstream-name . "rgexf")))
     (build-system r-build-system)
     (arguments
@@ -7606,8 +7634,7 @@ it.")
                                        source target)
                                (invoke "esbuild" source "--minify"
                                        (string-append "--outfile=" target)))
-                             sources targets))))
-             #t)))))
+                             sources targets)))))))))
     (propagated-inputs
      `(("r-igraph" ,r-igraph)
        ("r-servr" ,r-servr)
@@ -8419,14 +8446,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.")
 (define-public r-rbibutils
   (package
     (name "r-rbibutils")
-    (version "2.2.2")
+    (version "2.2.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rbibutils" version))
        (sha256
         (base32
-         "0ks43z6vvdz0d0jv5d2qrm12yb4cwvi7p3kjk6byi4farhh368di"))))
+         "1rzc2icik26qlnrbq58c24lc9m0grl83p0hyr70whallqfipa174"))))
     (properties `((upstream-name . "rbibutils")))
     (build-system r-build-system)
     (home-page "https://geobosh.github.io/rbibutils/")
@@ -8693,14 +8720,14 @@ other add-on packages.")
 (define-public r-insight
   (package
     (name "r-insight")
-    (version "0.14.2")
+    (version "0.14.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "insight" version))
        (sha256
         (base32
-         "0dy7m6fb9ciyskxjirk6k4blfj9k3n4zfyx677xm3cmscp61g8gp"))))
+         "1fynidv11wmh51ybwzqj3c206slfwdz8a53qr57lcxwrg7zjn94q"))))
     (build-system r-build-system)
     (native-inputs
      `(("r-knitr" ,r-knitr)))
@@ -8981,14 +9008,14 @@ matches version and feature constraints.")
 (define-public r-argparse
   (package
     (name "r-argparse")
-    (version "2.0.3")
+    (version "2.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "argparse" version))
        (sha256
         (base32
-         "1c2r417m1dxk1jhcggv3g4zax5a59k9rqs9jcs6xy2pa2333jqfj"))))
+         "1sgrr6acvfjbhksj45v6d5m5n5pp12kypcxisgbshlr9jdkmasd7"))))
     (build-system r-build-system)
     (inputs `(("python" ,python)))
     (propagated-inputs
@@ -10199,14 +10226,14 @@ samples is large and the number of mixture components is not too large.")
 (define-public r-magick
   (package
     (name "r-magick")
-    (version "2.7.2")
+    (version "2.7.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "magick" version))
        (sha256
         (base32
-         "1ckp85wk9lj6jjm92ww4mg1r4h4zm2cm68y6fyb1hz4mr3nihmji"))))
+         "0h942bn7wfnzbbgq9hrs75c7igmg5r1c5sad2v0znhza4cp7p1w3"))))
     (build-system r-build-system)
     (inputs
      `(("imagemagick" ,imagemagick)
@@ -10641,14 +10668,14 @@ Hothorn, Westfall, 2010, CRC Press).")
 (define-public r-emmeans
   (package
     (name "r-emmeans")
-    (version "1.6.2-1")
+    (version "1.6.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "emmeans" version))
        (sha256
         (base32
-         "04971fi02x4ajkx1mijdv283wb5acic0s1s8g68vv7vk2bk09rj4"))))
+         "1mwcq3hvpx04qnn5k0bv1mikjgm9mk6m83i8hj350s1c1a0mi40n"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-estimability" ,r-estimability)
@@ -11193,14 +11220,14 @@ user credentials.")
 (define-public r-gert
   (package
     (name "r-gert")
-    (version "1.3.1")
+    (version "1.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gert" version))
        (sha256
         (base32
-         "0ydakqhwi406pn255zgrzw31x01djrrjdaknh0d2ibw136lmw5hj"))))
+         "0pqrv58hqbf6cifwi9zxgnkql6a2j9i8wknnd5ng8z3d94zs12bz"))))
     (properties `((upstream-name . "gert")))
     (build-system r-build-system)
     (inputs
@@ -11684,6 +11711,40 @@ using @dfn{penalized quasi-likelihood} (PQL) estimation (see Jaeger et
 al. (2016)).")
     (license license:gpl2)))
 
+(define-public r-cmdfun
+  (package
+    (name "r-cmdfun")
+    (version "1.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "cmdfun" version))
+       (sha256
+        (base32
+         "1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"))))
+    (properties `((upstream-name . "cmdfun")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-magrittr" ,r-magrittr)
+       ("r-purrr" ,r-purrr)
+       ("r-r-utils" ,r-r-utils)
+       ("r-rlang" ,r-rlang)
+       ("r-testthat" ,r-testthat)
+       ("r-usethis" ,r-usethis)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://snystrom.github.io/cmdfun/")
+    (synopsis "Framework for building interfaces to shell commands")
+    (description
+     "Writing interfaces to command line software is cumbersome.  The cmdfun
+package provides a framework for building function calls to seamlessly
+interface with shell commands by allowing lazy evaluation of command line
+arguments.  It also provides methods for handling user-specific paths to tool
+installs or secrets like API keys.  Its focus is to equally serve package
+builders who wish to wrap command line software, and to help analysts stay
+inside R when they might usually leave to execute non-R software.")
+    (license license:expat)))
+
 (define-public r-weights
   (package
     (name "r-weights")
@@ -11833,14 +11894,14 @@ Bioconductor packages.")
 (define-public r-rgl
   (package
     (name "r-rgl")
-    (version "0.107.10")
+    (version "0.107.14")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rgl" version))
        (sha256
         (base32
-         "0ikqk30bpaak26f230rxi3l6fq5ym1558ngni86zs3nd42gqm3mi"))))
+         "1z5h4wbjj18prcykc96rqcn699pnqw6vybwj2mpbbbdw2lr3q8b7"))))
     (build-system r-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
@@ -13270,14 +13331,14 @@ preparing, executing, and processing HTTP requests.")
 (define-public r-bigrquery
   (package
     (name "r-bigrquery")
-    (version "1.3.2")
+    (version "1.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bigrquery" version))
        (sha256
         (base32
-         "16whccv7f94vf57dvbbrhdskz3nnbmpa11a14kp7aynckldlfy0v"))))
+         "02msq61l7vamzpvbhvalh3qil1aa7pr68pwpsivbb6pvz6p4zyns"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-assertthat" ,r-assertthat)
@@ -13288,6 +13349,7 @@ preparing, executing, and processing HTTP requests.")
        ("r-glue" ,r-glue)
        ("r-httr" ,r-httr)
        ("r-jsonlite" ,r-jsonlite)
+       ("r-lifecycle" ,r-lifecycle)
        ("r-prettyunits" ,r-prettyunits)
        ("r-progress" ,r-progress)
        ("r-rapidjsonr" ,r-rapidjsonr)
@@ -14394,14 +14456,14 @@ the local machine to, say, distributed processing on a remote compute cluster.")
 (define-public r-future-apply
   (package
     (name "r-future-apply")
-    (version "1.7.0")
+    (version "1.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "future.apply" version))
        (sha256
         (base32
-         "1ns5cf80vyabvyz9qp6kpvkg4jycinn7x6v7x6692fgjapdnmyig"))))
+         "1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"))))
     (properties `((upstream-name . "future.apply")))
     (build-system r-build-system)
     (arguments
@@ -16503,16 +16565,17 @@ SELECT or UPDATE queries to an end-point.")
 (define-public r-bookdown
   (package
     (name "r-bookdown")
-    (version "0.22")
+    (version "0.23")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "bookdown" version))
               (sha256
                (base32
-                "0j80wm36mw3f14ncfwm6xx09wff1kswfiv8b309x9y0f9r46dr0z"))))
+                "1q0n3pjhgpsin4z7bdf0hixkfxvbbn1wc23040yl11wzc5x2f1ap"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-htmltools" ,r-htmltools)
+       ("r-jquerylib" ,r-jquerylib)
        ("r-knitr" ,r-knitr)
        ("r-rmarkdown" ,r-rmarkdown)
        ("r-tinytex" ,r-tinytex)
@@ -16979,22 +17042,42 @@ improvements over the @code{convertColor} function in the @code{grDevices}
 package.")
     (license license:expat)))
 
+(define-public r-yulab-utils
+  (package
+    (name "r-yulab-utils")
+    (version "0.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "yulab.utils" version))
+       (sha256
+        (base32
+         "1haq6k0r64gs76p2vvrm42m64r8s32kzyz573pw9789y32zn0s5q"))))
+    (properties `((upstream-name . "yulab.utils")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/package=yulab.utils")
+    (synopsis "Supporting functions for packages maintained by YuLab-SMU")
+    (description
+     "Miscellaneous functions commonly used by YuLab-SMU, such as
+@code{install_zip_gh} to install R packages from Github ZIP files.")
+    (license license:artistic2.0)))
+
 (define-public r-ggplotify
   (package
     (name "r-ggplotify")
-    (version "0.0.8")
+    (version "0.0.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggplotify" version))
        (sha256
         (base32
-         "08c9vxm8pg6l5g3r7wsfgzsq00xdrc6v4xnn7pd3qcyw7cc8s969"))))
+         "1irm8pmf20bfl2djr591jfs7g8l7vw2673ri76pimz3285l74bp0"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
        ("r-gridgraphics" ,r-gridgraphics)
-       ("r-rvcheck" ,r-rvcheck)))
+       ("r-yulab-utils" ,r-yulab-utils)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/GuangchuangYu/ggplotify")
@@ -17532,6 +17615,31 @@ matrix and displays the significance level on the plot.  It also includes a
 function for computing a matrix of correlation p-values.")
     (license license:gpl2)))
 
+(define-public r-ggfun
+  (package
+    (name "r-ggfun")
+    (version "0.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ggfun" version))
+       (sha256
+        (base32
+         "0bf8pl3scy5fx15h1fx0799cb9sg9spjapqif9gcz27pmmgdc0n9"))))
+    (properties `((upstream-name . "ggfun")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-rlang" ,r-rlang)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://cran.r-project.org/package=ggfun")
+    (synopsis "Miscellaneous functions for ggplot2")
+    (description
+     "This package provides useful functions to edit ggplot object (e.g.,
+setting fonts for theme and layers, adding rounded rectangle as background for
+each of the legends).")
+    (license license:artistic2.0)))
+
 (define-public r-gridtext
   (package
     (name "r-gridtext")
@@ -18490,14 +18598,14 @@ classification and regression models.")
 (define-public r-dae
   (package
     (name "r-dae")
-    (version "3.1-37")
+    (version "3.2-10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "dae" version))
        (sha256
         (base32
-         "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l"))))
+         "1z5vxxzzpqfl78c2c60109jdr003j48qjisj3mrhsxa89wdv9hs9"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
@@ -19186,14 +19294,14 @@ emphasize hidden group structures in networks or focus on specific nodes.")
 (define-public r-terra
   (package
     (name "r-terra")
-    (version "1.3-4")
+    (version "1.3-22")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "terra" version))
        (sha256
         (base32
-         "04fcraicr79vrvzqfxqsgzqp6awf2g5qrvpi76dcm3c04i5z3rlc"))))
+         "1z5zql68q4n81ccpl02hndhbavhhqs65bli1hjxlqdwdq192whkh"))))
     (properties `((upstream-name . "terra")))
     (build-system r-build-system)
     (inputs
@@ -19952,14 +20060,14 @@ server-side.")
 (define-public r-sysfonts
   (package
     (name "r-sysfonts")
-    (version "0.8.4")
+    (version "0.8.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sysfonts" version))
        (sha256
         (base32
-         "0bq48hf2h4dkxymc36ypqvbwx5lbyj2m6fsikmgqiy4ixjpbvz8h"))))
+         "1fhf0x5sqx3mv72j9d0clkq1qzqiqxbxn1h808f7ccf0mb04v43y"))))
     (properties `((upstream-name . "sysfonts")))
     (build-system r-build-system)
     (inputs
@@ -20000,14 +20108,14 @@ package.")
 (define-public r-showtext
   (package
     (name "r-showtext")
-    (version "0.9-3")
+    (version "0.9-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "showtext" version))
        (sha256
         (base32
-         "0ghxd5la8is2mz5w7lk507zgcpr5lz30miqyhyn9cqazlsfwp4wa"))))
+         "1gvj32wrs5q31bmg5dy6n85d0igm3jhkldhdv8kscw0pfrk89y36"))))
     (properties `((upstream-name . "showtext")))
     (build-system r-build-system)
     (inputs
@@ -21215,13 +21323,13 @@ management} (aCRM).")
 (define-public r-tree
   (package
    (name "r-tree")
-   (version "1.0-40")
+   (version "1.0-41")
    (source (origin
             (method url-fetch)
             (uri (cran-uri "tree" version))
             (sha256
              (base32
-              "1rr6ws62j9h36f3nl713f8h3ndkh95mv46l055jvgmby5lw1dazz"))))
+              "13jwdxx3na16mly176n01zdkaqn4a8x9fc43rq5xx5vx31drkkr1"))))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/web/packages/tree/")
    (synopsis "Classification and regression trees")
@@ -23147,14 +23255,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.")
 (define-public r-quanteda
   (package
     (name "r-quanteda")
-    (version "3.0.0")
+    (version "3.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quanteda" version))
        (sha256
         (base32
-         "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8"))))
+         "0gafbb73gcxx2gq9q7bg88alyhymkr471lp394m5ydij6mdm4hb9"))))
     (properties `((upstream-name . "quanteda")))
     (build-system r-build-system)
     (propagated-inputs
@@ -23495,14 +23603,14 @@ and analyze Stan models.")
 (define-public r-rpf
   (package
     (name "r-rpf")
-    (version "1.0.7")
+    (version "1.0.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rpf" version))
        (sha256
         (base32
-         "04n605h091d6nijbbhar79zj7gfkymb6pp7v1496avzajy483klw"))))
+         "039r6yz2ax7i9sv8vi98yg7llwb966ay6mrifpmp6q3xh1f634kl"))))
     (properties `((upstream-name . "rpf")))
     (build-system r-build-system)
     (propagated-inputs
@@ -23934,14 +24042,14 @@ interesting features. iheatmapr uses the plotly library for interactivity.")
 (define-public r-packrat
   (package
     (name "r-packrat")
-    (version "0.6.0")
+    (version "0.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "packrat" version))
        (sha256
         (base32
-         "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr"))))
+         "1hnwhdgqljqs3m7c4rjlyndyc0k85jpa4rbfymxkm3zjg3yy3g78"))))
     (properties `((upstream-name . "packrat")))
     (build-system r-build-system)
     (home-page "https://github.com/rstudio/packrat/")
@@ -23955,14 +24063,14 @@ and reproducible way.")
 (define-public r-rsconnect
   (package
     (name "r-rsconnect")
-    (version "0.8.18")
+    (version "0.8.24")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rsconnect" version))
        (sha256
         (base32
-         "01bj16iggj5fggfa7n312458p8xg30zx2vzfkd8jqcchnbrphfvl"))))
+         "19p4w9dmhsl1vdvwv3hfmd5qzf4296g0x878idfajvrx0wgfysyg"))))
     (properties `((upstream-name . "rsconnect")))
     (build-system r-build-system)
     (propagated-inputs
@@ -24347,14 +24455,14 @@ climate data.")
 (define-public r-rlinsolve
   (package
     (name "r-rlinsolve")
-    (version "0.3.1")
+    (version "0.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rlinsolve" version))
        (sha256
         (base32
-         "1x02xxbkchcwwfa2123n9yqfzinfi0zba8zxhp977czzwysy75cc"))))
+         "1xv500n1480qyakw0isanw1s5ywykhc207hqja4804s5s2m8zfjw"))))
     (properties `((upstream-name . "Rlinsolve")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25024,20 +25132,19 @@ infinite-precision rational arithmetic.")
 (define-public r-rxnat
   (package
     (name "r-rxnat")
-    (version "1.0.14")
+    (version "1.0.15")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rxnat" version))
        (sha256
         (base32
-         "00fl68pa0c2vy4xlny67pn41lzgm7b97wgg3dwm6z35izca62l11"))))
+         "0siylypjd8cgcmr2c443w8krg8sgr5gz4zapbinanp8vsfzivdv2"))))
     (properties
      `((upstream-name . "Rxnat")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-dplyr" ,r-dplyr)
-       ("r-httr" ,r-httr)
+     `(("r-httr" ,r-httr)
        ("r-rcurl" ,r-rcurl)
        ("r-tibble" ,r-tibble)))
     (native-inputs
@@ -25190,17 +25297,100 @@ packages, but other reference models can also be used.  See the package
 vignette for more information and examples.")
     (license license:gpl3)))
 
+(define-public r-distributional
+  (package
+    (name "r-distributional")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "distributional" version))
+       (sha256
+        (base32
+         "0ps30ijlf0xwranxkq1z29d76d3zgy8drwxpnxp6ffmyma8mm3h2"))))
+    (properties
+     `((upstream-name . "distributional")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-digest" ,r-digest)
+       ("r-ellipsis" ,r-ellipsis)
+       ("r-farver" ,r-farver)
+       ("r-generics" ,r-generics)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-lifecycle" ,r-lifecycle)
+       ("r-numderiv" ,r-numderiv)
+       ("r-rlang" ,r-rlang)
+       ("r-scales" ,r-scales)
+       ("r-vctrs" ,r-vctrs)))
+    (home-page "https://pkg.mitchelloharawild.com/distributional/")
+    (synopsis "Vectorized probability distributions")
+    (description
+     "This package provides vectorized distribution objects with tools for
+manipulating, visualizing, and using probability distributions.  It was
+designed to allow model prediction outputs to return distributions rather than
+their parameters, allowing users to directly interact with predictive
+distributions in a data-oriented workflow.  In addition to providing generic
+replacements for p/d/q/r functions, other useful statistics can be computed
+including means, variances, intervals, and highest density regions.")
+    (license license:gpl3)))
+
+(define-public r-posterior
+  (package
+    (name "r-posterior")
+    (version "1.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "posterior" version))
+       (sha256
+        (base32
+         "000k2sih7r89nmw3nwndx5jljcvkyr61b96mdkqrw83rs74lnh6f"))))
+    (properties `((upstream-name . "posterior")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-abind" ,r-abind)
+       ("r-checkmate" ,r-checkmate)
+       ("r-distributional" ,r-distributional)
+       ("r-pillar" ,r-pillar)
+       ("r-rlang" ,r-rlang)
+       ("r-tensora" ,r-tensora)
+       ("r-tibble" ,r-tibble)
+       ("r-vctrs" ,r-vctrs)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://mc-stan.org/posterior/")
+    (synopsis "Tools for working with posterior distributions")
+    (description
+     "This package provides useful tools for both users and developers of
+packages for fitting Bayesian models or working with output from Bayesian
+models.  The primary goals of the package are to:
+
+@enumerate
+@item Efficiently convert between many different useful formats of
+draws (samples) from posterior or prior distributions.
+
+@item Provide consistent methods for operations commonly performed on draws,
+for example, subsetting, binding, or mutating draws.
+
+@item Provide various summaries of draws in convenient formats.
+
+@item Provide lightweight implementations of state of the art posterior
+inference diagnostics.
+@end enumerate
+")
+    (license license:bsd-3)))
+
 (define-public r-brms
   (package
     (name "r-brms")
-    (version "2.15.0")
+    (version "2.16.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "brms" version))
        (sha256
         (base32
-         "0byc3fyvf9qbvvgwf55ih5d4br1nnxlbaidq9fvr11bmv38h25y1"))))
+         "14ykj7h0pzyzsyd1c46ybapsz3aqnffjih5hm7khfa5jk05wbs7a"))))
     (properties `((upstream-name . "brms")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25218,6 +25408,7 @@ vignette for more information and examples.")
        ("r-mgcv" ,r-mgcv)
        ("r-nleqslv" ,r-nleqslv)
        ("r-nlme" ,r-nlme)
+       ("r-posterior" ,r-posterior)
        ("r-projpred" ,r-projpred)
        ("r-rcpp" ,r-rcpp)
        ("r-rstan" ,r-rstan)
@@ -25279,21 +25470,21 @@ multi-state models.")
 (define-public r-scatterpie
   (package
     (name "r-scatterpie")
-    (version "0.1.6")
+    (version "0.1.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "scatterpie" version))
        (sha256
         (base32
-         "1lilzybbxqhrjpwwf9050wf5f896pn5d93llp5da7ssrcn5bm9i8"))))
+         "1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z"))))
     (properties `((upstream-name . "scatterpie")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggforce" ,r-ggforce)
+       ("r-ggfun" ,r-ggfun)
        ("r-ggplot2" ,r-ggplot2)
        ("r-rlang" ,r-rlang)
-       ("r-rvcheck" ,r-rvcheck)
        ("r-tidyr" ,r-tidyr)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
@@ -27361,24 +27552,28 @@ functions or computational engines (e.g. R, Spark, Stan, etc).")
 (define-public r-infer
   (package
     (name "r-infer")
-    (version "0.5.4")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "infer" version))
        (sha256
         (base32
-         "0wvvgqjhyv7ql98cjzqad61wbmk7xrqd1ybk894jr5cmza13c8w2"))))
+         "1qbpcn7jqbvgwnpiyylj021j8m33p58a204yd1pfkpzd3x2lbsm6"))))
     (properties `((upstream-name . "infer")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-dplyr" ,r-dplyr)
+     `(("r-broom" ,r-broom)
+       ("r-dplyr" ,r-dplyr)
+       ("r-generics" ,r-generics)
        ("r-ggplot2" ,r-ggplot2)
        ("r-glue" ,r-glue)
        ("r-magrittr" ,r-magrittr)
+       ("r-patchwork" ,r-patchwork)
        ("r-purrr" ,r-purrr)
        ("r-rlang" ,r-rlang)
-       ("r-tibble" ,r-tibble)))
+       ("r-tibble" ,r-tibble)
+       ("r-tidyr" ,r-tidyr)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/tidymodels/infer")
@@ -27787,13 +27982,13 @@ other R users.")
 (define-public r-seurat
   (package
     (name "r-seurat")
-    (version "4.0.3")
+    (version "4.0.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "Seurat" version))
               (sha256
                (base32
-                "1jfzkqnk4r82ssyz6h51n2jybkdcjkpjdb2la6n2xqnfs2b8dnbm"))))
+                "1pa2v29mx39swblzwzqc7rpql2rizhi2nj426r1i63wyla6lcxc0"))))
     (properties `((upstream-name . "Seurat")))
     (build-system r-build-system)
     (propagated-inputs
@@ -28183,20 +28378,20 @@ implemented as @code{R6} classes.")
 (define-public r-mlr3
   (package
     (name "r-mlr3")
-    (version "0.11.0")
+    (version "0.12.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3" version))
               (sha256
                (base32
-                "0qh9vdac1als2123wf51bwa7spdqk33iydlawi5n5dpci892iahl"))))
+                "0nimwczsgrj29r9qrlz32qc3fkj02369zql7jhkrn3lk3mfy5zmz"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-r6" ,r-r6)
        ("r-backports" ,r-backports)
        ("r-checkmate" ,r-checkmate)
        ("r-data-table" ,r-data-table)
-       ("r-digest" ,r-digest)
+       ("r-future" ,r-future)
        ("r-future-apply" ,r-future-apply)
        ("r-lgr" ,r-lgr)
        ("r-mlbench" ,r-mlbench)
@@ -28219,16 +28414,17 @@ computational operations, add-on packages provide additional functionality.")
 (define-public r-mlr3learners
   (package
     (name "r-mlr3learners")
-    (version "0.4.5")
+    (version "0.5.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3learners" version))
               (sha256
                (base32
-                "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk"))))
+                "1gkbbn5ah2iv4pv5q2jf4lrqkga744d4y9jlyhyjqf0x75y9wkg2"))))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-data-table" ,r-data-table)
+     `(("r-checkmate" ,r-checkmate)
+       ("r-data-table" ,r-data-table)
        ("r-mlr3" ,r-mlr3)
        ("r-mlr3misc" ,r-mlr3misc)
        ("r-paradox" ,r-paradox)
@@ -28881,14 +29077,14 @@ and word lists.")
 (define-public r-english
   (package
     (name "r-english")
-    (version "1.2-5")
+    (version "1.2-6")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "english" version))
         (sha256
           (base32
-            "0d6rin40wy2y6k75x8d5qvf03rfy139f309wrl8xwbdb1h8fjkd1"))))
+            "1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"))))
     (properties `((upstream-name . "english")))
     (build-system r-build-system)
     (native-inputs `(("r-knitr" ,r-knitr)))
@@ -29498,14 +29694,14 @@ variability than the Poisson, but less than the negative binomial.")
 (define-public r-rjsonio
   (package
     (name "r-rjsonio")
-    (version "1.3-1.4")
+    (version "1.3-1.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RJSONIO" version))
        (sha256
         (base32
-         "141ijm9570mg1180isvi0jb9vd3b08s5gb9dl1wa5v0m3s9jq52l"))))
+         "1dp9kdf0ca27br1wsq9pj7d55n601achpbzdzxhykzz531xhmjrl"))))
     (properties `((upstream-name . "RJSONIO")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/package=RJSONIO")
@@ -29572,14 +29768,14 @@ quantitative real-time polymerase chain reaction (qPCR).")
 (define-public r-textplot
   (package
     (name "r-textplot")
-    (version "0.1.4")
+    (version "0.2.0")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "textplot" version))
         (sha256
           (base32
-            "1sgkndy2cxk8c76h8hwajn6f78w5jj2n8vsmaxh9kj931crzn8cy"))))
+            "1fhnwbcgkliq71lry21762djhlbap1qg4mgil0np46aa6619l21m"))))
     (properties `((upstream-name . "textplot")))
     (build-system r-build-system)
     (propagated-inputs
@@ -29794,14 +29990,14 @@ time zone manipulations.")
 (define-public r-vroom
   (package
     (name "r-vroom")
-    (version "1.5.3")
+    (version "1.5.4")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "vroom" version))
         (sha256
           (base32
-            "0hjb9qxv1ma7c38pihqhypc9l55ad1i1dfzxsz56jn3jsiw29ya4"))))
+            "15gbr35pmbnxjy0la2h20c0vf64q69gk7k996gn8b5wn3klxvg7n"))))
     (properties `((upstream-name . "vroom")))
     (build-system r-build-system)
     (propagated-inputs
@@ -29912,13 +30108,13 @@ reading and writing arbitrary protocol-buffer data in R.")
 (define-public r-opencpu
   (package
     (name "r-opencpu")
-    (version "2.2.4")
+    (version "2.2.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "opencpu" version))
        (sha256
-        (base32 "0f0lrqfzzrbaimd39v1gzdirf0zpkc5n58z8jj5nl6jb6mppf4qk"))))
+        (base32 "1qlwx8iq30qfy2sh0v31pxg955bj4zs0r7v8yklbdwb3qw7kv30g"))))
     (properties `((upstream-name . "opencpu")))
     (build-system r-build-system)
     (inputs
@@ -30116,26 +30312,49 @@ functions to retrieve the directory of the latest run or latest several
 runs.")
     (license license:asl2.0)))
 
+(define-public r-tfautograph
+  (package
+    (name "r-tfautograph")
+    (version "0.3.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "tfautograph" version))
+       (sha256
+        (base32
+         "1fgpvv330g61ghzhkwnzx04gd9l3d6x1vxd1xqslb05h5acagwqn"))))
+    (properties `((upstream-name . "tfautograph")))
+    (build-system r-build-system)
+    (inputs `(("tensorflow" ,tensorflow)))
+    (propagated-inputs
+     `(("r-reticulate" ,r-reticulate)))
+    (home-page "https://t-kalinowski.github.io/tfautograph/")
+    (synopsis "Autograph R for Tensorflow")
+    (description
+     "This package lets you translate R control flow expressions into
+Tensorflow graphs.")
+    (license license:gpl3)))
+
 (define-public r-tensorflow
   (package
     (name "r-tensorflow")
-    (version "2.5.0")
+    (version "2.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tensorflow" version))
        (sha256
         (base32
-         "00g9w4xmdyjl4578kmhng58k7afjkj2vwgcq2ik8rqwljkcz5pph"))))
+         "1lkzxc3b5gkcg4hwqr57cysplcba6ff44qz8lbvk19kxnrhjaf9g"))))
     (properties `((upstream-name . "tensorflow")))
     (build-system r-build-system)
     (inputs `(("tensorflow" ,tensorflow)))
     (propagated-inputs
      `(("r-config" ,r-config)
-       ("r-jsonlite" ,r-jsonlite)
        ("r-processx" ,r-processx)
        ("r-reticulate" ,r-reticulate)
        ("r-rstudioapi" ,r-rstudioapi)
+       ("r-tfautograph" ,r-tfautograph)
        ("r-tfruns" ,r-tfruns)
        ("r-yaml" ,r-yaml)))
     (home-page "https://github.com/rstudio/tensorflow")
@@ -30150,18 +30369,20 @@ between them.")
 (define-public r-keras
   (package
     (name "r-keras")
-    (version "2.4.0")
+    (version "2.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "keras" version))
        (sha256
         (base32
-         "00bw5f5d81md8db1k6bf2a91by4k25xvlwxiwv188y4vw3bfc7md"))))
+         "1pgdcypp9x9dw7aa5ka7qqgd24jdcp3ja94jpm7j6l6j4930k5vd"))))
     (properties `((upstream-name . "keras")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-generics" ,r-generics)
+     `(("r-ellipsis" ,r-ellipsis)
+       ("r-generics" ,r-generics)
+       ("r-glue" ,r-glue)
        ("r-magrittr" ,r-magrittr)
        ("r-r6" ,r-r6)
        ("r-reticulate" ,r-reticulate)
@@ -30179,3 +30400,1031 @@ experimentation, supports both convolution based networks and recurrent
 networks (as well as combinations of the two), and runs seamlessly on both CPU
 and GPU devices.")
     (license license:expat)))
+
+(define-public r-zzlite
+  (package
+    (name "r-zzlite")
+    (version "0.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zzlite" version))
+       (sha256
+        (base32
+         "0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"))))
+    (properties `((upstream-name . "zzlite")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-httr" ,r-httr)
+       ("r-jsonlite" ,r-jsonlite)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://cran.r-project.org/package=zzlite")
+    (synopsis "Wrapper for the Zamzar file conversion API")
+    (description
+     "This package provides a minor collection of HTTP wrappers for the Zamzar
+file conversion API.  The wrappers makes it easy to utilize the API and thus
+convert between more than 100 different file formats (ranging from audio
+files, images, movie formats, etc., etc.) through an R session.")
+    (license license:gpl3)))
+
+(define-public r-ztree
+  (package
+    (name "r-ztree")
+    (version "1.0.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zTree" version))
+       (sha256
+        (base32
+         "1mywxrx6bw7dzhrdwyxbjzc8ikgvw423zycyji0jjr69cfhpmywv"))))
+    (properties `((upstream-name . "zTree")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-plyr" ,r-plyr)))
+    (home-page "https://cran.r-project.org/package=zTree")
+    (synopsis "Functions to import data from z-Tree into R")
+    (description
+     "This package provides tools for reading @code{.xls} and @code{.sbj}
+files which are written by the proprietary program z-Tree for developing and
+carrying out economic experiments.")
+    (license license:gpl3)))
+
+(define-public r-distributionutils
+  (package
+    (name "r-distributionutils")
+    (version "0.6-0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "DistributionUtils" version))
+       (sha256
+        (base32
+         "08vq54pyqxlqsj6q6gsg5ikqa0z3x842j52ld5dxaq272p6xchvl"))))
+    (properties
+     `((upstream-name . "DistributionUtils")))
+    (build-system r-build-system)
+    (native-inputs
+     `(("gfortran" ,gfortran)))
+    (home-page "https://cran.r-project.org/package=DistributionUtils")
+    (synopsis "Distribution utilities")
+    (description
+     "This package provides utilities for dealing with distributions.
+Functionality includes sample skewness and kurtosis, log-histogram, tail
+plots, moments by integration, changing the point about which a moment is
+calculated, functions for testing distributions using inversion tests and the
+Massart inequality.  Also included is an implementation of the incomplete
+Bessel K function.")
+    (license license:gpl2+)))
+
+(define-public r-ztpln
+  (package
+    (name "r-ztpln")
+    (version "0.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ztpln" version))
+       (sha256
+        (base32
+         "18rbfdp22jaxg4nkqzj2393nhjdl1gzv4xhmr6aci76ymdixsfnl"))))
+    (properties `((upstream-name . "ztpln")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-distributionutils" ,r-distributionutils)
+       ("r-mixtools" ,r-mixtools)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcppeigen" ,r-rcppeigen)
+       ("r-rcppnumerical" ,r-rcppnumerical)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/mattocci27/ztpln")
+    (synopsis "Zero-truncated Poisson lognormal distribution")
+    (description
+     "This package provides functions for obtaining the density, random
+variates and maximum likelihood estimates of the Zero-truncated Poisson
+lognormal distribution and their mixture distribution.")
+    (license license:expat)))
+
+(define-public r-zscorer
+  (package
+    (name "r-zscorer")
+    (version "0.3.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zscorer" version))
+       (sha256
+        (base32
+         "0aijhs0fyird5gq68x4dxchb02mxa7ijk10k9zjhngghxbjj7iqn"))))
+    (properties `((upstream-name . "zscorer")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-shiny" ,r-shiny)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/nutriverse/zscorer")
+    (synopsis "Child Anthropometry z-Score Calculator")
+    (description
+     "This package provides a tool for calculating z-scores and centiles for
+weight-for-age, length/height-for-age, weight-for-length/height, BMI-for-age,
+head circumference-for-age, age circumference-for-age, subscapular
+skinfold-for-age, triceps skinfold-for-age based on the WHO Child Growth
+Standards.")
+    (license license:agpl3+)))
+
+(define-public r-zra
+  (package
+    (name "r-zra")
+    (version "0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ZRA" version))
+       (sha256
+        (base32
+         "1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"))))
+    (properties `((upstream-name . "ZRA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dygraphs" ,r-dygraphs)
+       ("r-forecast" ,r-forecast)))
+    (home-page "https://cran.r-project.org/package=ZRA")
+    (synopsis "Dynamic plots for time series forecasting")
+    (description
+     "This package combines a forecast of a time series, using the function @code{forecast},
+with the dynamic plots from @code{dygraphs}.")
+    (license license:gpl2+)))
+
+(define-public r-rfigshare
+  (package
+    (name "r-rfigshare")
+    (version "0.3.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "rfigshare" version))
+       (sha256
+        (base32
+         "1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"))))
+    (properties `((upstream-name . "rfigshare")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-httpuv" ,r-httpuv)
+       ("r-httr" ,r-httr)
+       ("r-plyr" ,r-plyr)
+       ("r-rjsonio" ,r-rjsonio)
+       ("r-xml" ,r-xml)
+       ("r-yaml" ,r-yaml)))
+    (home-page "https://github.com/ropensci/rfigshare")
+    (synopsis "R Interface to figshare")
+    (description
+     "This package provides an interface to figshare, a scientific repository
+to archive and assign DOIs to data, software, figures, and more.")
+    (license license:cc0)))
+
+(define-public r-dismo
+  (package
+    (name "r-dismo")
+    (version "1.3-3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dismo" version))
+       (sha256
+        (base32
+         "1jj9d78f251bxgrwbv1ycn677qnhvl40bfan12x8fhlaq4d36rgx"))))
+    (properties `((upstream-name . "dismo")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-raster" ,r-raster)
+       ("r-rcpp" ,r-rcpp)
+       ("r-sp" ,r-sp)))
+    (home-page "https://rspatial.org/raster/sdm/")
+    (synopsis "Species distribution modeling")
+    (description
+     "This package provides methods for species distribution modeling, i.e.,
+predicting the environmental similarity of any site to that of the locations
+of known occurrences of a species.")
+    (license license:gpl3+)))
+
+(define-public r-zoon
+  (package
+    (name "r-zoon")
+    (version "0.6.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoon" version))
+       (sha256
+        (base32
+         "02y29vr2yn8al69km8faiqrwjrc1r3hsvw3dg8lwjr65cxw1krip"))))
+    (properties `((upstream-name . "zoon")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dismo" ,r-dismo)
+       ("r-plyr" ,r-plyr)
+       ("r-randomforest" ,r-randomforest)
+       ("r-raster" ,r-raster)
+       ("r-rcurl" ,r-rcurl)
+       ("r-rfigshare" ,r-rfigshare)
+       ("r-rgdal" ,r-rgdal)
+       ("r-roxygen2" ,r-roxygen2)
+       ("r-rworldmap" ,r-rworldmap)
+       ("r-sp" ,r-sp)
+       ("r-testthat" ,r-testthat)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/zoonproject/zoon")
+    (synopsis "Reproducible, accessible and shareable species distribution modelling")
+    (description
+     "This package reads user submitted modules from an online repository,
+runs full species distribution modelling workflows and returns output that is
+fully reproducible.")
+    (license license:bsd-3)))
+
+(define-public r-paws-common
+  (package
+    (name "r-paws-common")
+    (version "0.3.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.common" version))
+       (sha256
+        (base32
+         "1khq1rv0yij4l0vi2x6hslnzpsd6m5n6nipfac7g3na9ah93h8i9"))))
+    (properties `((upstream-name . "paws.common")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-base64enc" ,r-base64enc)
+       ("r-digest" ,r-digest)
+       ("r-httr" ,r-httr)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-xml2" ,r-xml2)))
+    (home-page "https://cran.r-project.org/package=paws.common")
+    (synopsis "Paws low-level Amazon Web Services API")
+    (description
+     "This package provides functions for making low-level API requests to
+Amazon Web Services.  The functions handle building, signing, and sending
+requests, and receiving responses.  They are designed to help build
+higher-level interfaces to individual services, such as Simple Storage
+Service (S3).")
+    (license license:asl2.0)))
+
+(define-public r-paws-customer-engagement
+  (package
+    (name "r-paws-customer-engagement")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.customer.engagement" version))
+       (sha256
+        (base32
+         "0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"))))
+    (properties
+     `((upstream-name . "paws.customer.engagement")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services customer engagement services")
+    (description
+     "This package provides an interface to Amazon Web Services customer
+engagement services, including Simple Email Service, Connect contact center
+service, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-cost-management
+  (package
+    (name "r-paws-cost-management")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.cost.management" version))
+       (sha256
+        (base32
+         "0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"))))
+    (properties
+     `((upstream-name . "paws.cost.management")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services cost management services")
+    (description
+     "This package provides an interface to Amazon Web Services cost
+management services, including cost and usage reports, budgets, pricing, and
+more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-application-integration
+  (package
+    (name "r-paws-application-integration")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.application.integration" version))
+       (sha256
+        (base32
+         "0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42"))))
+    (properties
+     `((upstream-name . "paws.application.integration")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services application integration services")
+    (description
+     "This package provides an interface to Amazon Web Services application
+integration services, including Simple Queue Service (SQS) message queue,
+Simple Notification Service (SNS) publish/subscribe messaging, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-security-identity
+  (package
+    (name "r-paws-security-identity")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.security.identity" version))
+       (sha256
+        (base32
+         "092lz2ipn5iqr593x7ra8c0bj64yf6315mdc3llgwrjyb4vfxif9"))))
+    (properties
+     `((upstream-name . "paws.security.identity")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services security, identity, and compliance services")
+    (description
+     "This package provides an interface to Amazon Web Services security,
+identity, and compliance services, including the Identity and Access
+Management (IAM) service for managing access to services and resources, and
+more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-analytics
+  (package
+    (name "r-paws-analytics")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.analytics" version))
+       (sha256
+        (base32
+         "04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"))))
+    (properties
+     `((upstream-name . "paws.analytics")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services analytics services")
+    (description
+     "This package provides an interface to Amazon Web Services analytics
+services, including Elastic MapReduce Hadoop and Spark big data service,
+Elasticsearch search engine, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-machine-learning
+  (package
+    (name "r-paws-machine-learning")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.machine.learning" version))
+       (sha256
+        (base32
+         "01w2y5952pk50xjbzby2pc51xrkrzjpfxbmii1b10cl2xgzfkxsa"))))
+    (properties
+     `((upstream-name . "paws.machine.learning")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services machine learning services")
+    (description
+     "This package provides an interface to Amazon Web Services machine
+learning services, including SageMaker managed machine learning service,
+natural language processing, speech recognition, translation, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-management
+  (package
+    (name "r-paws-management")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.management" version))
+       (sha256
+        (base32
+         "09k7wg0jlj40zs2yb3vldffpkdcjg7ap98n7c5lxr5plpca08swg"))))
+    (properties
+     `((upstream-name . "paws.management")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services management and governance services")
+    (description
+     "This package provides an interface to Amazon Web Services management and
+governance services, including CloudWatch application and infrastructure
+monitoring, Auto Scaling for automatically scaling resources, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-networking
+  (package
+    (name "r-paws-networking")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.networking" version))
+       (sha256
+        (base32
+         "02hxaa5nlj70mdggh379ij3fn09xm8h5ldzsyf45c342prpl6zwj"))))
+    (properties
+     `((upstream-name . "paws.networking")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services networking and content delivery services")
+    (description
+     "This package provides an interface to Amazon Web Services networking and
+content delivery services, including Route 53 Domain Name System service,
+CloudFront content delivery, load balancing, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-database
+  (package
+    (name "r-paws-database")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.database" version))
+       (sha256
+        (base32
+         "08jpwz95fw3f68j0wxh2lg57nn60khflldab0ryhkkbcw1iy0qyz"))))
+    (properties `((upstream-name . "paws.database")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis
+     "Amazon Web Services Database Services")
+    (description
+     "This package provides an interface to Amazon Web Services database
+services, including Relational Database Service (RDS), DynamoDB NoSQL
+database, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws-storage
+  (package
+    (name "r-paws-storage")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.storage" version))
+       (sha256
+        (base32
+         "06m887vpqp5d6k3zxdlga599dsv8v3rladk7xqaxqnld1f17am04"))))
+    (properties `((upstream-name . "paws.storage")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services storage services")
+    (description
+     "This package provides an interface to Amazon Web Services storage
+services, including Simple Storage Service (S3).")
+    (license license:asl2.0)))
+
+(define-public r-paws-compute
+  (package
+    (name "r-paws-compute")
+    (version "0.1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws.compute" version))
+       (sha256
+        (base32
+         "1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky"))))
+    (properties `((upstream-name . "paws.compute")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-common" ,r-paws-common)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services compute services")
+    (description
+     "This package provides an interface to Amazon Web Services compute
+services, including Elastic Compute Cloud (EC2), Lambda
+functions-as-a-service, containers, batch processing, and more.")
+    (license license:asl2.0)))
+
+(define-public r-paws
+  (package
+    (name "r-paws")
+    (version "0.1.11")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "paws" version))
+       (sha256
+        (base32
+         "1pkwjdrziyh6bhpilx29zsv2nmv60z6fqxgx2kvjqvl8z36yqfhw"))))
+    (properties `((upstream-name . "paws")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-paws-analytics" ,r-paws-analytics)
+       ("r-paws-application-integration" ,r-paws-application-integration)
+       ("r-paws-compute" ,r-paws-compute)
+       ("r-paws-cost-management" ,r-paws-cost-management)
+       ("r-paws-customer-engagement" ,r-paws-customer-engagement)
+       ("r-paws-database" ,r-paws-database)
+       ("r-paws-machine-learning" ,r-paws-machine-learning)
+       ("r-paws-management" ,r-paws-management)
+       ("r-paws-networking" ,r-paws-networking)
+       ("r-paws-security-identity" ,r-paws-security-identity)
+       ("r-paws-storage" ,r-paws-storage)))
+    (home-page "https://github.com/paws-r/paws")
+    (synopsis "Amazon Web Services software development kit")
+    (description
+     "This package provides an interface to Amazon Web Services, including
+storage, database, and compute services, such as Simple Storage Service (S3),
+DynamoDB NoSQL database, and Lambda functions-as-a-service.")
+    (license license:asl2.0)))
+
+(define-public r-zoomgroupstats
+  (package
+    (name "r-zoomgroupstats")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoomGroupStats" version))
+       (sha256
+        (base32
+         "0gndiq92cy6gi7f833hdjvqii3cn83wz5rjvygcvjl3dw4pwv966"))))
+    (properties
+     `((upstream-name . "zoomGroupStats")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-dplyr" ,r-dplyr)
+       ("r-lubridate" ,r-lubridate)
+       ("r-magick" ,r-magick)
+       ("r-openxlsx" ,r-openxlsx)
+       ("r-paws" ,r-paws)
+       ("r-pbapply" ,r-pbapply)
+       ("r-stringr" ,r-stringr)
+       ("r-syuzhet" ,r-syuzhet)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "http://zoomgroupstats.org")
+    (synopsis "Analyze text, audio, and video from Zoom meetings")
+    (description
+     "This package provides utilities for processing and analyzing the files
+that are exported from a recorded Zoom meeting.  This includes analyzing data
+captured through video cameras and microphones, the text-based chat, and
+meta-data.  You can analyze aspects of the conversation among meeting
+participants and their emotional expressions throughout the meeting.")
+    (license license:expat)))
+
+(define-public r-zoom
+  (package
+    (name "r-zoom")
+    (version "2.0.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoom" version))
+       (sha256
+        (base32
+         "03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"))))
+    (properties `((upstream-name . "zoom")))
+    (build-system r-build-system)
+    (home-page "https://github.com/cbarbu/R-package-zoom")
+    (synopsis "Spatial data visualization tool")
+    (description
+     "This package provides @code{zm}, a utility that allows you to
+zoom/navigate any plot when called with any active plot.")
+    (license license:gpl3+)))
+
+(define-public r-zoolog
+  (package
+    (name "r-zoolog")
+    (version "0.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoolog" version))
+       (sha256
+        (base32
+         "1lgdr4hbpdh1b468i3l9msbj8wcd20m323lv5an9y6dnfb9pm986"))))
+    (properties `((upstream-name . "zoolog")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rdpack" ,r-rdpack)
+       ("r-stringi" ,r-stringi)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://josempozo.github.io/zoolog/")
+    (synopsis "Zooarchaeological analysis with log-ratios")
+    (description
+     "This package includes functions and reference data to generate and
+manipulate log-ratios (also known as @dfn{log size index} (LSI) values) from
+measurements obtained on zooarchaeological material.  Log ratios are used to
+compare the relative (rather than the absolute) dimensions of animals from
+archaeological contexts.  The zoolog package is also able to seamlessly
+integrate data and references with heterogeneous nomenclature, which is
+internally managed by a zoolog thesaurus.")
+    (license license:gpl3)))
+
+(define-public r-filehash
+  (package
+    (name "r-filehash")
+    (version "2.4-2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "filehash" version))
+       (sha256
+        (base32
+         "14zv7h5195dmfksgk8qvjgc2qq8253vga6267aa1bqs5bpvmdl5n"))))
+    (properties `((upstream-name . "filehash")))
+    (build-system r-build-system)
+    (home-page "http://github.com/rdpeng/filehash")
+    (synopsis "Simple key-value database")
+    (description
+     "This package implements a simple key-value style database where
+character string keys are associated with data values that are stored on the
+disk.  A simple interface is provided for inserting, retrieving, and deleting
+data from the database.  Utilities are provided that allow filehash databases
+to be treated much like environments and lists are already used in R.  These
+utilities are provided to encourage interactive and exploratory analysis on
+large datasets.")
+    (license license:gpl2+)))
+
+(define-public r-mlearning
+  (package
+    (name "r-mlearning")
+    (version "1.0-0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "mlearning" version))
+       (sha256
+        (base32
+         "0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"))))
+    (properties `((upstream-name . "mlearning")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-class" ,r-class)
+       ("r-e1071" ,r-e1071)
+       ("r-ipred" ,r-ipred)
+       ("r-mass" ,r-mass)
+       ("r-nnet" ,r-nnet)
+       ("r-randomforest" ,r-randomforest)))
+    (home-page "http://www.sciviews.org/zooimage")
+    (synopsis "Machine learning algorithms with unified interface")
+    (description
+     "This package provides a unified interface to various machine learning
+algorithms.  Confusion matrices are provided too.")
+    (license license:gpl2+)))
+
+(define-public r-zooimage
+  (package
+    (name "r-zooimage")
+    (version "5.5.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zooimage" version))
+       (sha256
+        (base32
+         "0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"))))
+    (properties `((upstream-name . "zooimage")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-digest" ,r-digest)
+       ("r-dt" ,r-dt)
+       ("r-filehash" ,r-filehash)
+       ("r-jpeg" ,r-jpeg)
+       ("r-mass" ,r-mass)
+       ("r-mda" ,r-mda)
+       ("r-mlearning" ,r-mlearning)
+       ("r-png" ,r-png)
+       ("r-shiny" ,r-shiny)
+       ("r-svdialogs" ,r-svdialogs)
+       ("r-svmisc" ,r-svmisc)
+       ("r-tiff" ,r-tiff)))
+    (home-page "http://www.sciviews.org/zooimage")
+    (synopsis "Analysis of numerical plankton images")
+    (description
+     "This package provides a solution for analyzing digital images of
+plankton.  In combination with ImageJ, an image analysis system, it processes
+digital images, measures individuals, trains for automatic classification of
+taxa, and finally, measures plankton samples (abundances, total and partial
+size spectra or biomasses, etc.).")
+    (license license:gpl2+)))
+
+(define-public r-zooarch
+  (package
+    (name "r-zooarch")
+    (version "1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zooaRch" version))
+       (sha256
+        (base32
+         "0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"))))
+    (properties `((upstream-name . "zooaRch")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page
+     "https://cran.r-project.org/package=zooaRch")
+    (synopsis
+     "Analytical Tools for Zooarchaeological Data")
+    (description
+     "The analysis and inference of faunal remains recovered from
+archaeological sites concerns the field of zooarchaeology.  The zooaRch
+package provides analytical tools to make inferences on zooarchaeological
+data.  Functions in this package allow users to read, manipulate, visualize,
+and analyze zooarchaeological data.")
+    (license license:gpl2+)))
+
+(define-public r-zonebuilder
+  (package
+    (name "r-zonebuilder")
+    (version "0.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zonebuilder" version))
+       (sha256
+        (base32
+         "0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn"))))
+    (properties `((upstream-name . "zonebuilder")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-sf" ,r-sf)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/zonebuilders/zonebuilder")
+    (synopsis "Create and explore geographic zoning systems")
+    (description
+     "This package provides functions, documentation and example data to help
+divide geographic space into discrete polygons (zones).  The functions are
+motivated by research into the merits of different zoning systems.  A flexible
+@code{ClockBoard} zoning system is provided, which breaks-up space by
+concentric rings and radial lines emanating from a central point.")
+    (license license:gpl3)))
+
+(define-public r-zonator
+  (package
+    (name "r-zonator")
+    (version "0.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zonator" version))
+       (sha256
+        (base32
+         "1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"))))
+    (properties `((upstream-name . "zonator")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ggplot2" ,r-ggplot2)
+       ("r-raster" ,r-raster)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)
+       ("r-reshape2" ,r-reshape2)
+       ("r-rgdal" ,r-rgdal)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://cbig.github.io/zonator/")
+    (synopsis "Utilities for Zonation spatial conservation prioritization")
+    (description
+     "Create new analysis setups and deal with results of Zonation
+conservation prioritization software.")
+    (license license:bsd-2)))
+
+(define-public r-mmwrweek
+  (package
+    (name "r-mmwrweek")
+    (version "0.1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "MMWRweek" version))
+       (sha256
+        (base32
+         "1l1ks44v52iggw9nhs56lfj6804yab5b17k8fzrc6h1kvj3vda0s"))))
+    (properties `((upstream-name . "MMWRweek")))
+    (build-system r-build-system)
+    (home-page "http://wwwn.cdc.gov/nndss/document/MMWR_Week_overview.pdf")
+    (synopsis "Convert dates to MMWR day, week, and year")
+    (description
+     "The first day of any MMWR week is Sunday.  MMWR week numbering is
+sequential beginning with 1 and incrementing with each week to a maximum of 52
+or 53.  MMWR week #1 of an MMWR year is the first week of the year that has at
+least four days in the calendar year.  This package provides functionality to
+convert dates to MMWR day, week, and year and the reverse.")
+    (license license:gpl2+)))
+
+(define-public r-crul
+  (package
+    (name "r-crul")
+    (version "1.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "crul" version))
+       (sha256
+        (base32
+         "1kjsc5gkx5k5cfwlfjp2cjm9cdzq2l1m68bnrjmahw3lkz8wzdph"))))
+    (properties `((upstream-name . "crul")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-curl" ,r-curl)
+       ("r-httpcode" ,r-httpcode)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-mime" ,r-mime)
+       ("r-r6" ,r-r6)
+       ("r-urltools" ,r-urltools)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/ropensci/crul")
+    (synopsis "HTTP client")
+    (description
+     "This package provides a simple HTTP client, with tools for making HTTP
+requests, and mocking HTTP requests.  The package is built on R6, and takes
+inspiration from Ruby's @code{faraday} gem.")
+    (license license:expat)))
+
+(define-public r-fauxpas
+  (package
+    (name "r-fauxpas")
+    (version "0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "fauxpas" version))
+       (sha256
+        (base32
+         "129fzqb7wsskbn50s8x0marr4wm8jrns6hiycqcsk166k3dnyyy8"))))
+    (properties `((upstream-name . "fauxpas")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-httpcode" ,r-httpcode)
+       ("r-r6" ,r-r6)
+       ("r-whisker" ,r-whisker)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://docs.ropensci.org/fauxpas")
+    (synopsis "HTTP error helpers")
+    (description
+     "This package provides HTTP error helpers.  Methods are included for
+general purpose HTTP error handling, as well as individual methods for every
+HTTP status code, both via status code numbers as well as their descriptive
+names.  It supports the ability to adjust behavior to stop, message or
+warning.  It includes the ability to use a custom whisker template to have any
+configuration of status code, short description, and verbose message.")
+    (license license:expat)))
+
+(define-public r-webmockr
+  (package
+    (name "r-webmockr")
+    (version "0.8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "webmockr" version))
+       (sha256
+        (base32
+         "0j40srwi0yasmllb9wsww4m6zkiyzqd549cis4dxd7c7p24hak8j"))))
+    (properties `((upstream-name . "webmockr")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-base64enc" ,r-base64enc)
+       ("r-crul" ,r-crul)
+       ("r-curl" ,r-curl)
+       ("r-fauxpas" ,r-fauxpas)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-magrittr" ,r-magrittr)
+       ("r-r6" ,r-r6)
+       ("r-urltools" ,r-urltools)))
+    (home-page "https://github.com/ropensci/webmockr")
+    (synopsis "Stubbing and setting expectations on HTTP Requests")
+    (description
+     "This is a package for stubbing and setting expectations on HTTP
+requests.  It includes tools for stubbing HTTP requests, including expected
+request conditions and response conditions.  You can match on HTTP method,
+query parameters, request body, headers and more.  It can be used for unit
+tests or outside of a testing context.")
+    (license license:expat)))
+
+(define-public r-mockery
+  (package
+    (name "r-mockery")
+    (version "0.4.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "mockery" version))
+       (sha256
+        (base32
+         "16zayzi2qdmiy513hvlci9f4p8jwry24006yfzrgmrvf6sf293lq"))))
+    (properties `((upstream-name . "mockery")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-testthat" ,r-testthat)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/jfiksel/mockery")
+    (synopsis "Mocking library for R")
+    (description
+     "The two main functionalities of this package are creating mock
+objects (functions) and selectively intercepting calls to a given function
+that originate in some other function.  It can be used with any testing
+framework available for R.  Mock objects can be injected with either this
+package's own @code{stub} function or a similar @code{with_mock} facility
+present in the @code{testthat} package.")
+    (license license:expat)))
+
+(define-public r-zoltr
+  (package
+    (name "r-zoltr")
+    (version "0.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoltr" version))
+       (sha256
+        (base32
+         "12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"))))
+    (properties `((upstream-name . "zoltr")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-base64url" ,r-base64url)
+       ("r-dplyr" ,r-dplyr)
+       ("r-httr" ,r-httr)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-magrittr" ,r-magrittr)
+       ("r-mmwrweek" ,r-mmwrweek)
+       ("r-mockery" ,r-mockery)
+       ("r-readr" ,r-readr)
+       ("r-rlang" ,r-rlang)
+       ("r-webmockr" ,r-webmockr)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/reichlab/zoltr")
+    (synopsis "Interface to the Zoltar forecast repository API")
+    (description
+     "Zoltar is a website that provides a repository of model forecast results
+in a standardized format and a central location.  It supports storing,
+retrieving, comparing, and analyzing time series forecasts for prediction
+challenges of interest to the modeling community.  This package provides
+functions for working with the Zoltar API, including connecting and
+authenticating, getting information about projects, models, and forecasts,
+deleting and uploading forecast data, and downloading scores.")
+    (license license:gpl3)))
+
+(define-public r-zoib
+  (package
+    (name "r-zoib")
+    (version "1.5.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "zoib" version))
+       (sha256
+        (base32
+         "0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f"))))
+    (properties `((upstream-name . "zoib")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-abind" ,r-abind)
+       ("r-coda" ,r-coda)
+       ("r-formula" ,r-formula)
+       ("r-rjags" ,r-rjags)))
+    (home-page "https://www.r-project.org")
+    (synopsis "Bayesian inference for beta regression")
+    (description
+     "This package lets you fit beta regression and zero-or-one inflated beta
+regression and obtain Bayesian inference of the model via the Markov Chain
+Monte Carlo approach implemented in JAGS.")
+    (license license:gpl3+)))
diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm
index 275963c311..746cdb2ec3 100644
--- a/gnu/packages/crates-io.scm
+++ b/gnu/packages/crates-io.scm
author	Ricardo Wurmus <rekado@elephly.net>	2021-04-28 10:15:43 +0200
committer	Ricardo Wurmus <rekado@elephly.net>	2021-04-28 10:18:07 +0200
commit	ffd5bc9600db50d5ffa7347f1aee8ee106db732d (patch)
tree	7b8972eb991cf30dab2f0509a636c431e396424e /doc
parent	fe28f395bc2271ecc1221d4ba30c237c2368d9dc (diff)
download	guix-ffd5bc9600db50d5ffa7347f1aee8ee106db732d.tar.gz guix-ffd5bc9600db50d5ffa7347f1aee8ee106db732d.zip