aboutsummaryrefslogtreecommitdiff
path: root/README
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2024-01-22 13:44:55 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-22 13:54:45 +0100
commit88beafd5dc9faa2c67175e2eba4bc962c946dfea (patch)
tree1cc46884beed740c8041c82e396f0f1bdb9e3658 /README
parent13c2e3c9e49828b8676452c270f0f4c9589a7175 (diff)
downloadguix-88beafd5dc9faa2c67175e2eba4bc962c946dfea.tar.gz
guix-88beafd5dc9faa2c67175e2eba4bc962c946dfea.zip
gnu: r-msdata: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.42.0. Change-Id: I94953464f1c9ef0e361c68a69fdbc9b11f46c4f8
Diffstat (limited to 'README')
0 files changed, 0 insertions, 0 deletions
generated by cgit
it/gnu/packages.scm?id=6a7c4636d4dec47eefa03c95da5a1315bd0e0413'>Adjust module autoloads....In Guile < 2.9.7, autoloading a module would give you access to all its bindings. In future versions, autoloading a module gives access only to the listed bindings, as per #:select (see <https://bugs.gnu.org/38895>). This commit adjusts autoloads to the new semantics, allowing Guix to be built with Guile 2.9.7/2.9.8. * guix/build/download.scm <top level>: Remove call to 'module-autoload!'. (load-gnutls): New procedure. (tls-wrap): Call it. * guix/git.scm <top level>: Remove call to 'module-autoload!'. (load-git-submodules): New procedure. (update-submodules): Call it instead of 'resolve-interface'. * gnu/bootloader/grub.scm: Replace #:autoload with #:use-module. * gnu/packages.scm: Likewise. * gnu/packages/ssh.scm: Likewise. * gnu/packages/tex.scm: Likewise. * gnu/services/cuirass.scm: Likewise. * gnu/services/mcron.scm: Likewise. * guix/lint.scm: Augment list of bindings in #:autoload. * guix/scripts/build.scm: Likewise. * guix/scripts/gc.scm: Likewise. * guix/scripts/pack.scm: Likewise. * guix/scripts/publish.scm: Likewise. * guix/scripts/pull.scm: Likewise. * guix/utils.scm: Remove unnecessary #:autoload clauses; replace one of them with #:use-module. Ludovic Courtès 2019-10-14packages: 'fold-available-packages' uses 'supported-package?'....Fixes <https://bugs.gnu.org/37748>. Reported by Marius Bakke <mbakke@fastmail.com>. This is a followup to d2d63e20d5b981009b61bf416b4d7b516e8f1f34. * gnu/packages.scm (fold-available-packages): Use 'supported-package?' instead of (member ... (package-supported-systems ...)) to match what 'generate-package-cache' does. Ludovic Courtès 2019-09-06packages: 'generate-package-cache' uses 'supported-package?'....* gnu/packages.scm (generate-package-cache): Use 'supported-package?' instead of 'package-supported-systems'. Ludovic Courtès 2019-06-27Merge branch 'master' into core-updatesLudovic Courtès 2019-06-27packages: 'specification->package+output' distinguishes "no output specified"....Until now the caller couldn't tell the different between a spec like "foo:out" and one like "foo". This change allows users to distinguish between these two cases. * gnu/packages.scm (specification->package+output): Disable output membership test when OUTPUT = #f and SUB-DRV = #f. * tests/packages.scm ("specification->package+output") ("specification->package+output invalid output") ("specification->package+output no default output") ("specification->package+output invalid output, no default"): New tests. Ludovic Courtès 2019-06-14packages: Remove 'search-bootstrap-binary'....* gnu/packages.scm (%bootstrap-binaries-path, search-bootstrap-binary): Remove. * gnu/packages/bootstrap.scm (bootstrap-executable): Export. * guix/tests.scm (bootstrap-binary-file, search-bootstrap-binary): Export. * tests/derivations.scm: Remove (gnu packages) import. * tests/grafts.scm: Likewise. * tests/guix-daemon.sh: Likewise. Ludovic Courtès 2019-05-01Merge branch 'master' into core-updatesMarius Bakke 2019-03-28packages: Reintroduce 'find-newest-available-packages'....This is a followup to e2a903c807ccacec5925f197ce26f626060e1953. * gnu/packages.scm (find-newest-available-packages): New procedure. Ludovic Courtès 2019-03-14Merge branch 'staging' into core-updatesMarius Bakke 2019-03-11packages: Add the channel .go files to the search path....Until now %LOAD-COMPILED-PATH would wrongfully contain: CHANNEL/share/guile/site/X.Y for each channel, thereby ignoring all the .go files of channels. This fixes it so that %LOAD-COMPILED-PATH instead contains: CHANNEL/lib/guile/X.Y/site-ccache * guix/describe.scm (current-channel-entries): New procedure. (package-path-entries): Change to return the %LOAD-COMPILED-PATH entries as a second value. * gnu/packages.scm (%package-module-path): Expect two values from 'package-path-entries' and augment %LOAD-COMPILED-PATH accordingly. Ludovic Courtès 2019-02-20Merge branch 'staging' into core-updatesMarius Bakke 2019-02-16packages: Remove duplicates from package cache....Previously the same package could appear several times if several variables were bound to it, as is notably the case for "python" currently. This, in turn, would lead to obnoxious "ambiguous package specification" messages. * gnu/packages.scm (generate-package-cache)[expand-cache]: Change RESULT to RESULT+SEEN and adjust accordingly. Call 'first' on the result of 'fold-module-public-variables*'. * tests/packages.scm ("fold-available-packages with/without cache"): Check for lack of duplicates in FROM-CACHE. Ludovic Courtès 2019-02-06Merge branch 'master' into core-updatesRicardo Wurmus 2019-01-15guix package: '--list-available' can use data from the cache....* gnu/packages.scm (fold-available-packages): New procedure. * guix/scripts/package.scm (process-query): Use it instead of 'fold-packages'. * tests/packages.scm ("fold-available-packages with/without cache"): New test. Ludovic Courtès 2019-01-15edit: Use 'specification->location' to read information from the cache....That way 'guix edit' doesn't need to load any package module. * gnu/packages.scm (find-package-locations, specification->location): New procedures. * guix/scripts/edit.scm (package->location-specification): Rename to... (location->location-specification): ... this. Expect a location object instead of a package. (guix-edit): Use 'specification->location' instead of 'specification->package'. * tests/packages.scm ("find-package-locations") ("find-package-locations with cache") ("specification->location"): New tests. Ludovic Courtès 2019-01-15channels: Compute a package cache and use it....* gnu/packages.scm (cache-is-authoritative?, load-package-cache) (cache-lookup, generate-package-cache): New procedures. (%package-cache-file): New variable. (find-packages-by-name): Rename to... (find-packages-by-name/direct): ... this. (find-packages-by-name): Rewrite to use the package cache when 'cache-is-authoritative?' returns true. * tests/packages.scm ("find-packages-by-name + version, with cache") ("find-packages-by-name with cache"): New tests. * guix/channels.scm (package-cache-file): New procedure. (%channel-profile-hooks): New variable. (channel-instances->derivation): Use it in #:hooks. * guix/scripts/package.scm (build-and-use-profile): Add #:hooks and honor it. * guix/scripts/pull.scm (build-and-install): Pass #:hooks to UPDATE-PROFILE. Ludovic Courtès 2019-01-15packages: Remove 'find-newest-available-packages'....Since commit 9ffc1c00e55eb7931846dbb3fafcf54716fff57c, 'find-newest-available-packages' and 'find-packages-by-name' were both building a vhash mapping package names to packages. This factorizes this bit, also reducing I/O, CPU, and memory usage. * gnu/packages.scm (find-best-packages-by-name): Remove. (find-best-packages-by-name): Use 'find-packages-by-name' instead of 'find-newest-available-packages'. Ludovic Courtès 2018-12-20gnu: Use i686-linux bootstrap binaries on x86_64-linux....This saves 4.4 MB on the installed Guix. * gnu/packages/bootstrap/x86_64-linux: Remove directory. * gnu/local.mk (bootstrap_x86_64_linuxdir) (dist_bootstrap_x86_64_linux_DATA): Remove. * gnu/packages.scm (search-bootstrap-binary): When SYSTEM is "x86_64-linux", use "i686-linux" instead. Ludovic Courtès 2018-09-02Add (guix describe) and use it to initialize '%package-search-path'....* guix/describe.scm: New file. * Makefile.am (MODULES): Add it. * gnu/packages.scm (%default-package-module-path): New variable. (%package-module-path): Honor 'package-path-entries'. * build-aux/update-NEWS.scm (main): Use %DEFAULT-PACKAGE-MODULE-PATH instead of (last (%package-module-path)). Ludovic Courtès 2018-05-13packages: 'find-packages-by-name' properly honors version prefixes....Fixes <https://bugs.gnu.org/28446>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages.scm (find-packages-by-name): Use 'version-prefix?' instead of 'string-prefix?'. Ludovic Courtès 2018-04-08discovery: Remove dependency on (guix ui)....This reduces the closure of (guix discovery) from 28 to 8 modules. * guix/discovery.scm (scheme-files): Use 'format' instead of 'warning'. (scheme-modules): Add #:warn parameter. Use it instead of 'warn-about-load-error'. (fold-modules): Add #:warn and pass it to 'scheme-modules'. (all-modules): Likewise. * gnu/bootloader.scm (bootloader-modules): Pass #:warn to 'all-modules'. * gnu/packages.scm (fold-packages): Likewise. * gnu/services.scm (all-service-modules): Likewise. * guix/upstream.scm (importer-modules): Likewise. Ludovic Courtès 2018-04-08Add (guix self)....* guix/self.scm: New file. * Makefile.am (MODULES): Add it. * gnu/packages.scm (%distro-root-directory): Rewrite to try different directories. * guix/discovery.scm (guix): Export 'scheme-files'. Ludovic Courtès 2017-11-07packages: 'fold-packages' takes #:select? parameter....* gnu/packages.scm (fold-packages): Add #:select? parameter and honor it. Ludovic Courtès 2017-09-01packages: 'fold-packages' takes an optional 'modules' parameter....Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it. Ludovic Courtès 2017-06-11packages: Add 'specifications->manifest'....* gnu/packages.scm (specifications->manifest): New procedure. * doc/guix.texi (Invoking guix package): Change example from using '(compose list specification->package+output)' to using 'specifications->manifest'. Ludovic Courtès 2017-05-03Add (guix discovery)....* guix/discovery.scm, tests/discovery.scm: New files. * gnu/packages.scm (scheme-files, file-name->module-name) (scheme-modules, all-package-modules): Remove. (fold-packages): Rewrite in terms of 'fold-module-public-variables'. * gnu/tests.scm: Use (guix discovery). * Makefile.am (MODULES): Add guix/discovery.scm. (SCM_TESTS): Add tests/discovery.scm. Ludovic Courtès 2017-05-03ui: Rename '_' to 'G_'....This avoids collisions with '_' when the latter is used as a 'match' pattern for instance. See <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00464.html>. * guix/ui.scm: Rename '_' to 'G_'. * po/guix/Makevars (XGETTEXT_OPTIONS): Adjust accordingly. * build-aux/compile-all.scm (warnings): Remove 'format'. * gnu/packages.scm, gnu/services.scm, gnu/services/shepherd.scm, gnu/system.scm, gnu/system/shadow.scm, guix/gnupg.scm, guix/http-client.scm, guix/import/cpan.scm, guix/import/elpa.scm, guix/import/pypi.scm, guix/nar.scm, guix/scripts.scm, guix/scripts/archive.scm, guix/scripts/authenticate.scm, guix/scripts/build.scm, guix/scripts/challenge.scm, guix/scripts/container.scm, guix/scripts/container/exec.scm, guix/scripts/copy.scm, guix/scripts/download.scm, guix/scripts/edit.scm, guix/scripts/environment.scm, guix/scripts/gc.scm, guix/scripts/graph.scm, guix/scripts/hash.scm, guix/scripts/import.scm, guix/scripts/import/cpan.scm, guix/scripts/import/cran.scm, guix/scripts/import/crate.scm, guix/scripts/import/elpa.scm, guix/scripts/import/gem.scm, guix/scripts/import/gnu.scm, guix/scripts/import/hackage.scm, guix/scripts/import/nix.scm, guix/scripts/import/pypi.scm, guix/scripts/import/stackage.scm, guix/scripts/lint.scm, guix/scripts/offload.scm, guix/scripts/pack.scm, guix/scripts/package.scm, guix/scripts/perform-download.scm, guix/scripts/publish.scm, guix/scripts/pull.scm, guix/scripts/refresh.scm, guix/scripts/size.scm, guix/scripts/substitute.scm, guix/scripts/system.scm, guix/ssh.scm, guix/upstream.scm: Use 'G_' instead of '_'. Most of this change was obtained by running: "sed -i -e's/(_ "/(G_ "/g' `find -name \*.scm`". Ludovic Courtès 2017-05-01packages: Remove support for PACKAGE-VERSION deprecated syntax....This syntax had been deprecated since 2016-02-28. * gnu/packages.scm (%find-package): Remove #:fallback? parameter and handling. * tests/guix-build.sh: Remove test for "time-1.7" syntax. * doc/guix.texi (Invoking guix lint): Update 'guix lint' output in example. Ludovic Courtès