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authorRicardo Wurmus <rekado@elephly.net>2019-04-27 20:44:43 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-27 20:45:21 +0200
commitfc3ebc3023f2c419ad07536de9211109c1bb2452 (patch)
tree20c96eca7deeb7760c4a677bc1a822e003b0f5cc
parentd22d790409d3a3b22f2a5660176e6407147ad597 (diff)
downloadguix-fc3ebc3023f2c419ad07536de9211109c1bb2452.tar.gz
guix-fc3ebc3023f2c419ad07536de9211109c1bb2452.zip
gnu: r-ggbio: Fix build.
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to patch out typo.
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 10 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4891bb15af..78d6fe8718 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9953,6 +9953,16 @@ effort and encourages consistency.")
(base32
"0wq49qqzkcn8s19xgaxf2s1j1a563d7pbhhvris6fhxfdjsz4934"))))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; See https://github.com/tengfei/ggbio/issues/117
+ ;; This fix will be included in the next release.
+ (add-after 'unpack 'fix-typo
+ (lambda _
+ (substitute* "R/GGbio-class.R"
+ (("fechable") "fetchable"))
+ #t)))))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationfilter" ,r-annotationfilter)