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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-12-09 09:15:41 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-09 11:17:45 +0100 |
| commit | f505f588a7d00e33d26337632548b7c7809760b8 (patch) | |
| tree | 9941776dfb39ffd9d26c495d7c00e11e0fbc6697 | |
| parent | 3ebcd637a589cbea1868992bd5c6f2b8477181fc (diff) | |
| download | guix-f505f588a7d00e33d26337632548b7c7809760b8.tar.gz guix-f505f588a7d00e33d26337632548b7c7809760b8.zip | |
gnu: Add htslib-for-samtools-1.2.
* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ae450b7190..833a91b1f3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4965,6 +4965,30 @@ data. It also provides the @command{bgzip}, @command{htsfile}, and (base32 "1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9")))))) +(define htslib-for-samtools-1.2 + (package + (inherit htslib) + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/samtools/htslib/releases/download/" + version "/htslib-" version ".tar.bz2")) + (sha256 + (base32 + "1c32ssscbnjwfw3dra140fq7riarp2x990qxybh34nr1p5r17nxx")))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-tests + (lambda _ + (substitute* "test/test.pl" + (("/bin/bash") (which "bash")))))))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("perl" ,perl))))) + (define-public idr (package (name "idr") |