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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-02 17:20:54 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-02 17:20:54 +0100 |
| commit | ee069ec6516aa1e73a582a56718943246e550bf9 (patch) | |
| tree | 0869b88b14331cb260b9f5580ab708cd1edbc48b | |
| parent | 9ddc4e5b0338accbc707992050d2a9c21c41e05e (diff) | |
| download | guix-ee069ec6516aa1e73a582a56718943246e550bf9.tar.gz guix-ee069ec6516aa1e73a582a56718943246e550bf9.zip | |
gnu: Add python-genomic-regions.
* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6c6ff3e25a..78ce670ea6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -57,6 +57,7 @@ #:use-module (guix build-system meson) #:use-module (guix build-system ocaml) #:use-module (guix build-system perl) + #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix build-system qt) #:use-module (guix build-system r) @@ -10601,6 +10602,37 @@ traditional read alignments) and massively-parallel stochastic collapsed variational inference.") (license license:gpl3+))) +(define-public python-genomic-regions + (package + (name "python-genomic-regions") + (version "0.0.10") + (source (origin + (method url-fetch) + (uri (pypi-uri "genomic_regions" version)) + (sha256 + (base32 + "0hz811iyd1prml1r90qyzimmwyjwycwkjqw4vnl12bxy61rfzjz5")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-future + python-intervaltree + python-numpy + python-pandas + python-pybedtools + python-pybigwig + python-pytest + python-msgpack-numpy + python-cython + python-msgpack + python-pysam)) + (home-page "https://pypi.org/project/genomic-regions/") + (synopsis "Consistently handle genomic regions") + (description "This package aims to simplify working with genomic region / +interval data by providing a common interface that lets you access a wide +selection of file types and formats for handling genomic region data---all +using the same syntax.") + (license license:expat))) + (define-public python-loompy (package (name "python-loompy") |