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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-08 11:37:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-08 11:53:29 +0200 |
| commit | e118b92cfe7a598b71dbbda2622b7551f4a72104 (patch) | |
| tree | 51c2e9008d44afa00a7ef07ec7c7f4d98372f5c8 | |
| parent | c2a2d40e6d9f0cac3ae9496a6a1b5fb15346b947 (diff) | |
| download | guix-e118b92cfe7a598b71dbbda2622b7551f4a72104.tar.gz guix-e118b92cfe7a598b71dbbda2622b7551f4a72104.zip | |
gnu: Add r-seurat5.
* gnu/packages/cran.scm (r-seurat5): New variable.
| -rw-r--r-- | gnu/packages/cran.scm | 68 |
1 files changed, 68 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 53cab3adad..e5a6c806b4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -34415,6 +34415,74 @@ algorithms; density clustering, hierarchical clustering, k-means, and the discovery of differentially expressed genes and markers.") (license license:gpl3))) +;; Seurat5 is only available via the seurat5 branch. It will replace r-seurat +;; eventually once it has been released to CRAN. +(define-public r-seurat5 + (let ((commit "9d59c02042b9ae4f182fbde84cc8b18c0873ef4d") + (revision "1")) + (package + (inherit r-seurat) + (name "r-seurat5") + (version (git-version "4.9.9.9044" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/satijalab/seurat") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0y4wl6aanq9scn2clazlxsar35g64v4sfy561j43fq1i85na7m4i")))) + (propagated-inputs (list r-cluster + r-cowplot + r-fastdummies + r-fitdistrplus + r-future + r-future-apply + r-generics + r-ggplot2 + r-ggrepel + r-ggridges + r-httr + r-ica + r-igraph + r-irlba + r-jsonlite + r-kernsmooth + r-leiden + r-lifecycle + r-lmtest + r-mass + r-matrix + r-matrixstats + r-miniui + r-patchwork + r-pbapply + r-plotly + r-png + r-progressr + r-rann + r-rcolorbrewer + r-rcpp + r-rcppannoy + r-rcppeigen + r-rcpphnsw + r-rcppprogress + r-reticulate + r-rlang + r-rocr + r-rspectra + r-rtsne + r-scales + r-scattermore + r-sctransform + r-seurat5object + r-shiny + r-spatstat-explore + r-spatstat-geom + r-tibble + r-uwot))))) + (define-public r-seuratdisk (let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610") (revision "1")) |