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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-04-03 17:06:59 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-04-03 21:33:45 +0200 |
| commit | e0c92dd6472cb20b1dea9186a45b7a423742d525 (patch) | |
| tree | c2be69397bcbf5dae44c4ac817ff1f5b8eed93b4 | |
| parent | 6a2a78fde19683f07c8b10f492cda67447bc99eb (diff) | |
| download | guix-e0c92dd6472cb20b1dea9186a45b7a423742d525.tar.gz guix-e0c92dd6472cb20b1dea9186a45b7a423742d525.zip | |
gnu: vcflib: Update to 1.0.12.
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.12.
[arguments]: Adjust patches.
[native-inputs]: Remove multichoose sources.
Change-Id: I9e5158e04dd695e90565994be4356201518bedc5
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 7 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 473e91bda9..48a503ffbb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22367,7 +22367,7 @@ sequences to accelerate the alignment process.") (define-public vcflib (package (name "vcflib") - (version "1.0.9") + (version "1.0.12") (source (origin (method git-fetch) @@ -22376,7 +22376,7 @@ sequences to accelerate the alignment process.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0cmznzq7hl5vr504ww262rwz5lfdfrca5ksbcvwh3cgp44fiwykv")) + (base32 "1llqnbgx4ybb77cp5k3cs0y7n4p8ma6b3sj10iarpg5r6a5gps5a")) (modules '((guix build utils))) (snippet #~(begin @@ -22393,9 +22393,10 @@ sequences to accelerate the alignment process.") (string-append "${FASTAHACK_LIBRARIES} " "${WFA2_LIBRARIES} " "${SMITHWATERMAN_LIBRARIES} " - text))) + text)) + (("install\\(TARGETS \\$\\{WFALIB\\}.*") "")) (substitute* (find-files "." "\\.(h|c)(pp)?$") - (("\"SmithWatermanGotoh.h\"") "<smithwaterman/SmithWatermanGotoh.h>") + (("SmithWatermanGotoh.h") "smithwaterman/SmithWatermanGotoh.h") (("\"convert.h\"") "<smithwaterman/convert.h>") (("\"disorder.h\"") "<smithwaterman/disorder.h>") (("\"wavefront/wfa.hpp\"") "<wavefront/wfa.hpp>") @@ -22421,8 +22422,7 @@ sequences to accelerate the alignment process.") ;; This package builds against the .o files so we need to extract the source. ("filevercmp-src" ,(package-source filevercmp)) ("fsom-src" ,(package-source fsom)) - ("intervaltree-src" ,(package-source intervaltree)) - ("multichoose-src" ,(package-source multichoose)))) + ("intervaltree-src" ,(package-source intervaltree)))) (arguments (list #:configure-flags @@ -22463,8 +22463,7 @@ sequences to accelerate the alignment process.") (and (unpack "filevercmp-src" "contrib/filevercmp") (unpack "fsom-src" "contrib/fsom") - (unpack "intervaltree-src" "contrib/intervaltree") - (unpack "multichoose-src" "contrib/multichoose")) + (unpack "intervaltree-src" "contrib/intervaltree")) ;; This is needed for downstream packages to allow building ;; with GCC 11+. |