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authorRicardo Wurmus <rekado@elephly.net>2020-10-31 13:43:12 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-10-31 13:46:44 +0100
commitcd98078c7582b9eac6671df912892094c322ba3d (patch)
treedff641051d510ba6aedf53787410d27732ec24f0
parent47882865562c13db1809dfe2ed5eb926410ce253 (diff)
downloadguix-cd98078c7582b9eac6671df912892094c322ba3d.tar.gz
guix-cd98078c7582b9eac6671df912892094c322ba3d.zip
gnu: r-sctransform: Update to 0.3.1.
* gnu/packages/cran.scm (r-sctransform): Update to 0.3.1. [propagated-inputs]: Remove r-rcppeigen; add r-matrixstats and r-rcpparmadillo.
-rw-r--r--gnu/packages/cran.scm7
1 files changed, 4 insertions, 3 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 38715a8e08..08702dca61 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15778,14 +15778,14 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
(define-public r-sctransform
(package
(name "r-sctransform")
- (version "0.3")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "sctransform" version))
(sha256
(base32
- "1vyjxzghfvw57pwncvkfg3lbcsqfdsiplh1h4vscxpnd3872nrq3"))))
+ "0b8ni8dzlcikjm2bx5w8yi9vygx0qqxjrmnsy4kf7d1h03n2sxwa"))))
(build-system r-build-system)
(propagated-inputs
`(("r-future" ,r-future)
@@ -15794,8 +15794,9 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
("r-gridextra" ,r-gridextra)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
("r-rcpp" ,r-rcpp)
- ("r-rcppeigen" ,r-rcppeigen)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/ChristophH/sctransform")
(synopsis "Variance stabilizing transformations for Single Cell UMI Data")
re store (with-status-verbosity 2 (run-with-store store (mlet* %store-monad ((drv (mapm %store-monad system-test-value tests)) (out -> (map derivation->output-path drv))) (mbegin %store-monad (show-what-to-build* drv) (set-build-options* #:keep-going? #t #:keep-failed? #t #:print-build-trace #t #:print-extended-build-trace? #t #:fallback? #t) (built-derivations* drv) (mlet %store-monad ((valid (filterm (store-lift valid-path?) out)) (failed (filterm (store-lift (negate valid-path?)) out))) (format #t "TOTAL: ~a\n" (length drv)) (for-each (lambda (item) (format #t "PASS: ~a~%" item)) valid) (for-each (lambda (item) (format #t "FAIL: ~a~%" item)) failed) (exit (null? failed)))))))))