aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2021-05-04 15:37:04 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-04 15:37:04 +0200
commitbee797fa930e9357dcdf878526e75363f81ac4e7 (patch)
treeb1b4a45ae7579ea4d9f34c6ec4135a3f42d05c56
parent6cd9cb0e133c7f93c7d76e7a39e465d6e9a50b68 (diff)
downloadguix-bee797fa930e9357dcdf878526e75363f81ac4e7.tar.gz
guix-bee797fa930e9357dcdf878526e75363f81ac4e7.zip
gnu: Add r-guitar.
* gnu/packages/bioconductor.scm (r-guitar): New variable.
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9b49c6ec43..599704bd9f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11168,6 +11168,38 @@ export to genome browser viewable files, and functions for enrichment
analyses.")
(license license:artistic2.0)))
+(define-public r-guitar
+ (package
+ (name "r-guitar")
+ (version "2.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Guitar" version))
+ (sha256
+ (base32
+ "0lvfrpgrvmrz4f4qmsii70hw10h72zh1g1alv2sf6a6ixhndm0mz"))))
+ (properties `((upstream-name . "Guitar")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-dplyr" ,r-dplyr)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-knitr" ,r-knitr)
+ ("r-magrittr" ,r-magrittr)
+ ("r-rtracklayer" ,r-rtracklayer)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/Guitar")
+ (synopsis "Visualize genomic features")
+ (description
+ "This package is designed for visualization of RNA-related genomic
+features with respect to the landmarks of RNA transcripts, i.e., transcription
+starting site, start codon, stop codon and transcription ending site.")
+ (license license:gpl2)))
+
(define-public r-sushi
(package
(name "r-sushi")